Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_0969 |
Symbol | |
ID | 4626756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 1216460 |
End bp | 1218037 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639796186 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_942408 |
Protein GI | 119944728 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.375142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0777887 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACAA ATAAGGATAA ATACAGTATA GATAATACCG ATTATACTGT CGGACAGGAT AACGTTCAAA AATGGGGTTT TGATATACAT AACCCTGTAT TTGGTGCTAG TGCAGGTTTA ATCTCACTCT TTTTAATTAC AATTTTAGTT ATCGATCCGG CAATATCAAA AGATTTTTTA GATGGTTTAA AATGGAACAT TATAGGAACA TTTGATAGCT TCTTTATGTG GTCGGCCAAT TTTTTTGTAA TCTTCTGTTT GGCATTAATT GTCTCTCCTT TCGGTAAAAT TCGCTTAGGT GGCGACGATG CAAAAGCGGA TCATTCAAGA CTTTCCTGGA TAGCGATGCT TTTTGCTGCA GGGATGGGGA TTGGTTTGAT GTTTTGGGGT GTTGCTGAGC CCGCAGCGTA TTACACAGGC TGGTATGAAA CGCCACTAAA TGTAGTCGCT AATACACCGG CTGCAGCAGA GCTTGCATTA GGTGCAACTA TGTACCACTG GGGATTACAC CCTTGGGCGA TTTATGGCGT AGTGGCCTTA TCCTTATCAT TCTTTGCTTA TAATAAAGGC TTGCCGCTTT CAATACGATC TGCTTTTTAT CCGATATTGG GAGACCGTAC TTGGGGCTGG CCGGGACATA TCATTGATGT GTTAGCCGTA TTAGCCACAT TATTTGGTCT AGCAACATCA CTAGGCTTAG GCGCGCAGCA AGCTGCTGGC GGAATCCAGC ATGTATTTGG CATTGAAGCC GACCTCACCC TGCAAATCAC TATTATTGTG GTGGTGACTA TGCTGGCTAT TGTCTCGGTG GTACGTGGCC TTGAAGGTGG TGTTAAATTA ATCAGTAATG TCAATATGTT AATTGCTGTT GTTTTAGTCG TTTTTGTTGC ACTCGTGACC CTGGCGGTTT CGATCGGCTC TATCCCCACA ACTATAATGG GTTATGTTAA GAATATTATC CCCTTGAGTA ATCCAATGGG TCGCGATGAC GAAGCCTGGA TGCAAGGTTG GACGGTCTTT TATTGGGCAT GGTGGATTTC ATGGTCTCCT TTTGTGGGTA TGTTTATTGC GCGGATATCG CGCGGCCGTA CGGTACGTGA ATTTCTTACC GCAGTAATGA TTATACCAAC AGCAGTCACT ATTTTATGGA TGTCTGTATT TGGTGGTGTC GCTATTGACC AAATTGTCAA TAATGTCGGC ATATTGGGGA GTGAAGGTTT AACGGACGTT TCGCTTGCCA TGTTCCAGAT GTTTGATGCT TTGCCATTAG GTAGCATCTT ATCAATGATA GCTGTGCTAC TGGTAATGGT TTTCTTTATT ACCTCTTCCG ATTCCGGTTC GCTGGTTATA GACAGTATTA CTGCGGGTGG TAAAATTGAT GCGCCGATTC CACAACGTAT TTTTTGGGCA ACAATCGAGG GTGCAGTTGC GGCTGTTTTA CTCTGGGTTG GTGGCACTGA GGCGATTGAG GCATTACAAG CGGGTGCTAT TTCGACTGGC CTACCCTTTA CCATTATTCT ATTAGTAATG TGTGTCAGTT TGTTGATGGG TATGCGCACA GAAAAAAATA AAAGCTAG
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Protein sequence | MKTNKDKYSI DNTDYTVGQD NVQKWGFDIH NPVFGASAGL ISLFLITILV IDPAISKDFL DGLKWNIIGT FDSFFMWSAN FFVIFCLALI VSPFGKIRLG GDDAKADHSR LSWIAMLFAA GMGIGLMFWG VAEPAAYYTG WYETPLNVVA NTPAAAELAL GATMYHWGLH PWAIYGVVAL SLSFFAYNKG LPLSIRSAFY PILGDRTWGW PGHIIDVLAV LATLFGLATS LGLGAQQAAG GIQHVFGIEA DLTLQITIIV VVTMLAIVSV VRGLEGGVKL ISNVNMLIAV VLVVFVALVT LAVSIGSIPT TIMGYVKNII PLSNPMGRDD EAWMQGWTVF YWAWWISWSP FVGMFIARIS RGRTVREFLT AVMIIPTAVT ILWMSVFGGV AIDQIVNNVG ILGSEGLTDV SLAMFQMFDA LPLGSILSMI AVLLVMVFFI TSSDSGSLVI DSITAGGKID APIPQRIFWA TIEGAVAAVL LWVGGTEAIE ALQAGAISTG LPFTIILLVM CVSLLMGMRT EKNKS
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