Gene Ping_0969 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0969 
Symbol 
ID4626756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1216460 
End bp1218037 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content43% 
IMG OID639796186 
Productcholine/carnitine/betaine transporter 
Protein accessionYP_942408 
Protein GI119944728 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.375142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0777887 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACAA ATAAGGATAA ATACAGTATA GATAATACCG ATTATACTGT CGGACAGGAT 
AACGTTCAAA AATGGGGTTT TGATATACAT AACCCTGTAT TTGGTGCTAG TGCAGGTTTA
ATCTCACTCT TTTTAATTAC AATTTTAGTT ATCGATCCGG CAATATCAAA AGATTTTTTA
GATGGTTTAA AATGGAACAT TATAGGAACA TTTGATAGCT TCTTTATGTG GTCGGCCAAT
TTTTTTGTAA TCTTCTGTTT GGCATTAATT GTCTCTCCTT TCGGTAAAAT TCGCTTAGGT
GGCGACGATG CAAAAGCGGA TCATTCAAGA CTTTCCTGGA TAGCGATGCT TTTTGCTGCA
GGGATGGGGA TTGGTTTGAT GTTTTGGGGT GTTGCTGAGC CCGCAGCGTA TTACACAGGC
TGGTATGAAA CGCCACTAAA TGTAGTCGCT AATACACCGG CTGCAGCAGA GCTTGCATTA
GGTGCAACTA TGTACCACTG GGGATTACAC CCTTGGGCGA TTTATGGCGT AGTGGCCTTA
TCCTTATCAT TCTTTGCTTA TAATAAAGGC TTGCCGCTTT CAATACGATC TGCTTTTTAT
CCGATATTGG GAGACCGTAC TTGGGGCTGG CCGGGACATA TCATTGATGT GTTAGCCGTA
TTAGCCACAT TATTTGGTCT AGCAACATCA CTAGGCTTAG GCGCGCAGCA AGCTGCTGGC
GGAATCCAGC ATGTATTTGG CATTGAAGCC GACCTCACCC TGCAAATCAC TATTATTGTG
GTGGTGACTA TGCTGGCTAT TGTCTCGGTG GTACGTGGCC TTGAAGGTGG TGTTAAATTA
ATCAGTAATG TCAATATGTT AATTGCTGTT GTTTTAGTCG TTTTTGTTGC ACTCGTGACC
CTGGCGGTTT CGATCGGCTC TATCCCCACA ACTATAATGG GTTATGTTAA GAATATTATC
CCCTTGAGTA ATCCAATGGG TCGCGATGAC GAAGCCTGGA TGCAAGGTTG GACGGTCTTT
TATTGGGCAT GGTGGATTTC ATGGTCTCCT TTTGTGGGTA TGTTTATTGC GCGGATATCG
CGCGGCCGTA CGGTACGTGA ATTTCTTACC GCAGTAATGA TTATACCAAC AGCAGTCACT
ATTTTATGGA TGTCTGTATT TGGTGGTGTC GCTATTGACC AAATTGTCAA TAATGTCGGC
ATATTGGGGA GTGAAGGTTT AACGGACGTT TCGCTTGCCA TGTTCCAGAT GTTTGATGCT
TTGCCATTAG GTAGCATCTT ATCAATGATA GCTGTGCTAC TGGTAATGGT TTTCTTTATT
ACCTCTTCCG ATTCCGGTTC GCTGGTTATA GACAGTATTA CTGCGGGTGG TAAAATTGAT
GCGCCGATTC CACAACGTAT TTTTTGGGCA ACAATCGAGG GTGCAGTTGC GGCTGTTTTA
CTCTGGGTTG GTGGCACTGA GGCGATTGAG GCATTACAAG CGGGTGCTAT TTCGACTGGC
CTACCCTTTA CCATTATTCT ATTAGTAATG TGTGTCAGTT TGTTGATGGG TATGCGCACA
GAAAAAAATA AAAGCTAG
 
Protein sequence
MKTNKDKYSI DNTDYTVGQD NVQKWGFDIH NPVFGASAGL ISLFLITILV IDPAISKDFL 
DGLKWNIIGT FDSFFMWSAN FFVIFCLALI VSPFGKIRLG GDDAKADHSR LSWIAMLFAA
GMGIGLMFWG VAEPAAYYTG WYETPLNVVA NTPAAAELAL GATMYHWGLH PWAIYGVVAL
SLSFFAYNKG LPLSIRSAFY PILGDRTWGW PGHIIDVLAV LATLFGLATS LGLGAQQAAG
GIQHVFGIEA DLTLQITIIV VVTMLAIVSV VRGLEGGVKL ISNVNMLIAV VLVVFVALVT
LAVSIGSIPT TIMGYVKNII PLSNPMGRDD EAWMQGWTVF YWAWWISWSP FVGMFIARIS
RGRTVREFLT AVMIIPTAVT ILWMSVFGGV AIDQIVNNVG ILGSEGLTDV SLAMFQMFDA
LPLGSILSMI AVLLVMVFFI TSSDSGSLVI DSITAGGKID APIPQRIFWA TIEGAVAAVL
LWVGGTEAIE ALQAGAISTG LPFTIILLVM CVSLLMGMRT EKNKS