| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0677 |
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| Symbol | rpoS |
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| ID | 4626474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 864787 |
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| End bp | 865755 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639795877 |
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| Product | RNA polymerase sigma-38 factor RpoS |
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| Protein accession | YP_942129 |
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| Protein GI | 119944449 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.632708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTAAGG ATTTAAAATT AGAGAGCAAA AAAAGTCTCC CTTTTGATCT GGATGAAAAT
GCAGATACAG ATACAGATAC AATTGATGAT GAAGATTTTA GTGCCGCTAA GATAGCTGTT
GCTAATGAAG TAAAAAGCAT GGATGCAACT CAACTTTATT TAGGTGAAAT TGGTTTCTCG
CCACTATTAA CAGCAGAAGA AGAAGTTTAT TACGCCCGGC GTTTACTGCG CGGTGATCAA
GTATCACGTA AACGCATGAT AGAAAGTAAT TTACGCCTGG TAGTGAAAAT TTCCCGTCGT
TATAATAATC GTGGATTATC ATTATTAGAT TTAGTTGAAG AGGGTAACCT AGGGCTTATT
CGGGCTGTTG AAAAATTTGA TCCGGAAAAA GGCTTTCGCT TTTCAACCTA TGCAACCTGG
TGGATACGTC AAACGATTGA ACGCGCGATA ATGAATCAAA CCCGTACTAT TCGTTTGCCT
ATCCACATAG TAAAAAAATT AAATGTGTAT TTACGAACTG CCCGTGAATT AACACACACG
CTTACTCACG AACCAACGGC TGAAGAGATC GCCGAAGTTT TGGGAGTCTC CGCGAAAGAA
GTCTCTAAGA TTTTAAAACT TAATGAGCGT ATTAGTTCCG TTGATATCCC CATAGGAAAT
AATTCTGATA AAGAATTATT GGATATTATT CCAGATCGAA AAGAGGCTTC ACCGGAAAAT
GAACTGCAAG AGGCTGATAT GAAACTGCGT ATTGTTAAGT GGTTAGAAGA CCTTAATCCT
AAACAGCGTG AAGTATTAGC AAGACGATTT GGTTTGTTAG GTTATGAAGC TGCAACACTT
GAAAATGTGG GGAAAGAGAT CGGTCTGACA CGCGAACGTG TGCGGCAGAT ACAAGTTGAA
GCGCTAAAAT ATTTACGTGA TGTACTCTCT GAGCAGGGTT TATCAATCGA ATCATTGTTT
CAAGTTTAG
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| Protein sequence | MIKDLKLESK KSLPFDLDEN ADTDTDTIDD EDFSAAKIAV ANEVKSMDAT QLYLGEIGFS
PLLTAEEEVY YARRLLRGDQ VSRKRMIESN LRLVVKISRR YNNRGLSLLD LVEEGNLGLI
RAVEKFDPEK GFRFSTYATW WIRQTIERAI MNQTRTIRLP IHIVKKLNVY LRTARELTHT
LTHEPTAEEI AEVLGVSAKE VSKILKLNER ISSVDIPIGN NSDKELLDII PDRKEASPEN
ELQEADMKLR IVKWLEDLNP KQREVLARRF GLLGYEAATL ENVGKEIGLT RERVRQIQVE
ALKYLRDVLS EQGLSIESLF QV
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