| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0509 |
|---|
| Symbol | |
|---|
| ID | 4623435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 646514 |
|---|
| End bp | 648457 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639795706 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_941963 |
|---|
| Protein GI | 119944283 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.171501 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGTAG TGTTTTTAAA ATTGCGAACA TCTTGCAACA TTGCATTTAA GAACATAACC
ACATTAGTGA GTGCTACCGT GAAAATTAAA GAAAGGTTTA ATATTTTGAA TTTAGACGCT
AATGAAAAAC TGCTCTTTCA AAGTGAAGAA AAAGAAAAGC TGGCCGCTGA GTTAATCATT
GCCGAGGAAG AAAAAGAAAA GCTGGCTGCC GAGTTAGTCA TTGCCAAGGA AGAAAAAGAA
AAACTGGCTG CCGAATTAGT CATTGCTCTT GAATTTCGTA TTGCCGCCAC TGCCTTTGAA
TCTCAAGAAG GCATGTTTAT CACCGATGCT AATAACCGTA TTCTTCGCGT GAATAAGGCC
TATATCAGAA TTTCAGGCTA CAGTGCAGAA GAAGTTATTG GACAAAAACC TAAGCTATTT
AGCTCTGGCC GGCAAGAAAA AGTGTTCTAT AAGGCGATGT GGGACAGTAT CAACAGCACC
GACGCATGGG AAGGTGAGAT ATGGAATAGC CGCAAAAATG GTGATATCTA TCCTGGACAT
ATGACTATTA CTGCAGTGAA AGATACCAAC GGGATGGTCT CTAATTATGT CGCTATGATC
ATAGATATTA CGTTAGACAA AGCTGCCTCG GAAGAAATCA ATAACCTCGC CTACTTTGAT
CCGCTCACTA AGTTGCCAAA CCGCCGTCTA TTGCTTGATG AACTTAATCT TGCCCTCACT
ATTAATGCGC GCACTCATCA GTATGGTGCA TTACTGTTTA TTGATTTAGA CCACCTTAAA
ACCCTCAATA ATACCCGTGG CCACGATGTG GGAAATTTAT TATTAAAACA AGTAACCACC
CGCTTAACTG AAAGTGTTAG AGAAGGTGAT ACCATCGCTC GATTGGGCTG TAATGAGTTT
GTGGTGGTGT TAGAAAACCT CAGCCCACAA GCAATTAAAG CTACTGCACA AACCAAACAG
ATGGCCAAAA AAATCCTCTT TACACTGACT CAACCCTACT CACTCAATGC GATCAAGTAT
CACTGCACCC TCAGTATCGG CGCGACAATT TTCAATGGGC ATGAATTGGG ATCAGAGGAG
CTGTTAAAGC AAGCGGATAT TGCTATGTAT CAATCCAAGG ACGCAGGGCG TAACAGCCTT
TGTTTCTTTA ATCAAACAAT GCTGGAAGCT ATTACTATCC GTGCAGAGAT GGAAAATGAA
CTGCACAAAG CGATTAAACA AAATCAATTC CAACTATATT ATCAAATACA GGTTAACGGC
TCTGGTCAAG CATTAGGAGC TGAAGCCTTA ATCCGCTGGC AACATCCAGA ACGTGGTCAG
ATTTCACCCT TTAACTTTAT TCCTTTAGCC GAAGAAACAG GGCTTATTTT ACCGATAGGG
CAATGGGTAT TAGATACCGC CTGTGCTCAA CTTAAAAAAT GGCAACAGAA CCCACTGACA
CAAGACCTTG TACTCGCCGT TAATGTCAGT GCGAAACAAT TTCATCAAGA AGACTTTATA
GAACAAGTCA AAACCACTCT GCAACGTCAT CAGATTATCC CTGACCGACT AAAGCTAGAA
CTAACCGAAA GTATGTTGGT GGAAAATATT AGCGATATCA TTATCAAAAT GAATACGCTC
AGAAAAATAG GTATTTTATT CTCATTAGAC GACTTTGGCA CTGGTTATTC TTCTTTACAA
TATCTAAAAA GATTGCCCAT CAATCAATTA AAAATAGACC AGTCATTTGT GCGTGACCTT
ATTACGGATG CCCATGACAG AATAATTGTA CGCACTATCA TTGCCATGTC ACATAGCTTA
GGTATCGACG TTATTGCCGA GGGTGTCGAG ACAGTAGAAG AAAAACAATT CCTGTTGAAT
AAAGGCTGTA CCCATTATCA AGGTTATTTA TTTAGCAAAC CCGTGCCAAT TGATGAGTTT
GAGGCGTTGC TTAAGTCGGG CTGA
|
|---|
| Protein sequence | MIVVFLKLRT SCNIAFKNIT TLVSATVKIK ERFNILNLDA NEKLLFQSEE KEKLAAELII
AEEEKEKLAA ELVIAKEEKE KLAAELVIAL EFRIAATAFE SQEGMFITDA NNRILRVNKA
YIRISGYSAE EVIGQKPKLF SSGRQEKVFY KAMWDSINST DAWEGEIWNS RKNGDIYPGH
MTITAVKDTN GMVSNYVAMI IDITLDKAAS EEINNLAYFD PLTKLPNRRL LLDELNLALT
INARTHQYGA LLFIDLDHLK TLNNTRGHDV GNLLLKQVTT RLTESVREGD TIARLGCNEF
VVVLENLSPQ AIKATAQTKQ MAKKILFTLT QPYSLNAIKY HCTLSIGATI FNGHELGSEE
LLKQADIAMY QSKDAGRNSL CFFNQTMLEA ITIRAEMENE LHKAIKQNQF QLYYQIQVNG
SGQALGAEAL IRWQHPERGQ ISPFNFIPLA EETGLILPIG QWVLDTACAQ LKKWQQNPLT
QDLVLAVNVS AKQFHQEDFI EQVKTTLQRH QIIPDRLKLE LTESMLVENI SDIIIKMNTL
RKIGILFSLD DFGTGYSSLQ YLKRLPINQL KIDQSFVRDL ITDAHDRIIV RTIIAMSHSL
GIDVIAEGVE TVEEKQFLLN KGCTHYQGYL FSKPVPIDEF EALLKSG
|
|---|
| |