Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_0009 |
Symbol | |
ID | 4625098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 15412 |
End bp | 16119 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 639795202 |
Product | HAD family hydrolase |
Protein accession | YP_941483 |
Protein GI | 119943803 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.7922 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATACT ACCGGGCAAT TAAACCTTTT AAAGCGATTA GTTTTGATCT TGATGATACG CTTTATGATA ATCACCATAT CATCAAAAAA GCCAATCAAT CGATTATTGA GCACCTTAAT CAAACCTATC CTGAGCTGGC AGAATTGACC GAAAAACAGT GGTCATTATA CAAAGATATA GAAGTGGCGG AATTTCCAGA AATAAAACAT GATGTTTCTT TATGGCGAAC CCAAACACTG ACTCGAATAA TGATCATTTA CGGGATCCCG GAGTTTAAGG CCATAAAGTA TGCACAACGT GCATTTTCTG AGTTTTTAAA ACTGCGCAGT GATTTTGTAG TCCCGGAAGC AAGTTTAACG CTATTAGATA AGTTAGCACA AACTTACCCG ATAATAGCTA TTACTAATGG TAATGTTGAT GAATTTAAAA TCCAACTTGA TGATAAATTT AAGTTTATTT TAAAAGCGGG TAATGGTTTT AAATCTAAAC CAGAAGGTGA TTTGTTTATT GAAGCGGCCA GACGTTTAAA TATTGAAGTC AGTGATATTT TACATGTCGG CGATCATTTA ATTAGTGATG TTTATGGTGC TCAAAACAAT GGTGCACAAG CCGTTTGGTT TAATCCCAAT AAGCAGTCTC TGAGTGGTGC GATGTTATTA CCAACCGTGG AAATCAGTCG TTTAGATCAA TTATATAAAC TGCTATAA
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Protein sequence | MKYYRAIKPF KAISFDLDDT LYDNHHIIKK ANQSIIEHLN QTYPELAELT EKQWSLYKDI EVAEFPEIKH DVSLWRTQTL TRIMIIYGIP EFKAIKYAQR AFSEFLKLRS DFVVPEASLT LLDKLAQTYP IIAITNGNVD EFKIQLDDKF KFILKAGNGF KSKPEGDLFI EAARRLNIEV SDILHVGDHL ISDVYGAQNN GAQAVWFNPN KQSLSGAMLL PTVEISRLDQ LYKLL
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