| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4233 |
|---|
| Symbol | aspS |
|---|
| ID | 8255369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 5109621 |
|---|
| End bp | 5111366 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644937899 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_003094486 |
|---|
| Protein GI | 255534114 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.118029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGAA CAACTACTTG CGGAGCTTTA ACCATTAAGA ACTTAGGAGA AAATGTAATC
CTATGCGGTT GGGTACAAAA ATCAAGAGAT TTAGGGGGAA TGACTTTTAT AGACATTCGC
GACAGATATG GTATTACCCA GTTGGTTTTC AATATGGATG ACAACCGCGA ACTGTGTGAG
GCAGCCCGCA ACCTTGGCCG TGAATTTGTA ATCAAAGCAA GCGGCCTGGT AGTAGAGCGT
TCCAATAAGA ACCTGAAAAT GCCAACCGGC GAGGTGGAAA TAAAGATCAC TGCCCTGGAA
GTGTTAAACG CAGCTAAACT GCCCCCCTTT TTAATAGATG ACGAAACGGA CGGTGGTGAC
GACCTGCGCA TGAAGTACCG TTACCTGGAT TTACGCCGTA ACCCGGTACG CAACAACATG
ATCATCCGTC ATAAAATTGC TCAGGCGGTG AGACGTTATC TTGACGGACT CGACTTTATA
GAAGTGGAAA CGCCTGTCCT CATCAAATCA ACGCCCGAAG GGGCAAGGGA TTTTGTTGTG
CCAAGCCGCA TGAATGCAGG TGAGTTCTAT GCTTTACCTC AGTCTCCGCA AACTTTTAAA
CAATTGTTAA TGGTTTCGGG TTTCGACAGG TATTTCCAGA TTGTGAAATG CTTTAGAGAT
GAGGACCTGC GTGCCGACAG GCAGCCCGAG TTTACACAGA TCGACTGCGA AATGTCTTTC
ATCGAACAGG AAGATATATT GAATACATTT GAAGGCCTGA TCCGAACTTT GTTTAAAGAA
ATTAAAGGAA TAGACCTGCC CGAAGTACCA AGGATGCAAT ATGCAGATGC CATGCGCCTG
TATGGATCTG ACAAGCCTGA TACCCGTTTT GACATGCAGT TTGTAGAATT AAACCACCTG
GTTAAAGGCA AAGATTTTCC GGTATTTGAC CATGCAGAGC TGGTGATCGG GATCAATGCC
AAAGGTTGCG CAAGCTATAC CCGCAAACAG GTGGATGAGC TCACAGACTT CATTAAAAGA
CCACAGGTCG GGGCAACTGG TTTAATCTAC CTCAGACACA ACGAAGATGG CTCCCTGAAA
TCATCTGTAG ATAAATTCTA TAACGAAGAA GATTTAAAGG GCTGGTCGGC CGCCCTGAAT
ACCCAACCTG GGGATTTGGT ACTGGTCATG GCCGGAACTA CAGATAAAGT GCGCAAACAA
CTGAGTGAAC TACGCCTGGA AATGGGTAAC CGCTTAGGCT TACGCGATAA AAATGTTTTC
AGTGCATTGT GGGTGCTCGA CTTTCCTTTA CTGGAATGGG ATGAAGAAAC GGAACGTTAT
CATGCCATGC ACCACCCTTT TACCTCTCCT AAACCGGAAG ATATTGTGCT GCTGGACACT
AAACCTGCTG AGGTTAGGGC CAATGCTTAT GATATGGTTA TTAATGGCAC CGAAGTAGGT
GGGGGTTCGA TCAGGATCCA CGACAGGGCC CTGCAGGCTT TAATGTTCAA ACACCTGGGC
TTCTCAACAG AAGAGGCACA AAAGCAGTTT GGGTTTTTAA TGGATGCCTT TGAATTTGGG
GCACCTCCGC ATGGTGGCAT CGCTTTTGGA TTTGACCGGT TATGCTCCAT CTTTGCCGGA
CTGGACAGTA TCCGCGATGT GATTGCTTTC CCTAAAAACA ATTCAGGAAG AGATGTAATG
ATCGACAGCC CGTCAACAAT TGACGAAAAA CAACTGAACG AATTAAAAAT AAAGTCTACT
GTTTAA
|
|---|
| Protein sequence | MLRTTTCGAL TIKNLGENVI LCGWVQKSRD LGGMTFIDIR DRYGITQLVF NMDDNRELCE
AARNLGREFV IKASGLVVER SNKNLKMPTG EVEIKITALE VLNAAKLPPF LIDDETDGGD
DLRMKYRYLD LRRNPVRNNM IIRHKIAQAV RRYLDGLDFI EVETPVLIKS TPEGARDFVV
PSRMNAGEFY ALPQSPQTFK QLLMVSGFDR YFQIVKCFRD EDLRADRQPE FTQIDCEMSF
IEQEDILNTF EGLIRTLFKE IKGIDLPEVP RMQYADAMRL YGSDKPDTRF DMQFVELNHL
VKGKDFPVFD HAELVIGINA KGCASYTRKQ VDELTDFIKR PQVGATGLIY LRHNEDGSLK
SSVDKFYNEE DLKGWSAALN TQPGDLVLVM AGTTDKVRKQ LSELRLEMGN RLGLRDKNVF
SALWVLDFPL LEWDEETERY HAMHHPFTSP KPEDIVLLDT KPAEVRANAY DMVINGTEVG
GGSIRIHDRA LQALMFKHLG FSTEEAQKQF GFLMDAFEFG APPHGGIAFG FDRLCSIFAG
LDSIRDVIAF PKNNSGRDVM IDSPSTIDEK QLNELKIKST V
|
|---|
| |