| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4115 |
|---|
| Symbol | |
|---|
| ID | 8255249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 4971042 |
|---|
| End bp | 4972331 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644937779 |
|---|
| Product | glucose/galactose transporter |
|---|
| Protein accession | YP_003094368 |
|---|
| Protein GI | 255533996 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.312497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAATG AAACCCTAAC CATACAGACT CCGGCTAAAA AAGCCCTGAC CATGCAAATC
ATAACTATTG GTGCTTTCTT TTTTATTTTC GGTTTCATAA CCTGGGTTAA CGGAACACTG
ATCCCTTACC TGAGAATAGC CTGTGAACTG GAAGAATGGC AGGCTTACCT GGTTACTTTT
GCCTTCTACA TTTCCTATAC CGTGATGGCC ATTCCGTCCA GCAAAATTCT GGAACGGACA
GGTATGGTTA AAGGGATGCG TGTTGGTTTG ATAATTATGG CTATTGGTTG TGCTTTGTTT
ATACCTGCGG CCTTAATGCG TTATTACCCT TTATTTTTAT TGGGCTTGTT TGTAGTGGGC
ACAGGTACAA CCTTATTGCA AACGGCGGTG AATCCTTATA TTACACTGCT TGGCCCTCCT
GAAAAGGCTG CACAACGCAT CAGCATGATG GGTATATGCA ATAAATTTGC CGGTGTAATT
GCCCCGCTTA TTTTAGGCGC TATTATTCTT AAAAATTCTG ATGGCCTGAT TGCCGAACTT
CAGCAGATGG CAGATGCAGC CCGTAAATTA CGTTTGGATA GCCTTGCACA TGCAGTAATA
TTACCTTATA TAGCACTGAC GCTCATCCTT TTAGCCATAG CCTATCTCAT TAAATTTGCG
CATTTACCTG AAATTGAAGC CTCATTACCA GCACGTCCGG ATAAGGGGAC AATTGATTTA
AAACAGGCGG CTAAACTGCG GCTAAACTTT ATATTGGGCT TTATTGCAAC ATTTTCGACC
GTTGGCCTGG AAGTGATAGC CGGAGATACT ATTGGTAATT ATGGCATTTA TCATGGCCTT
TCCTTAAACA TTGCAAAGAA CCTTACTGCC TATACCTTAG CAAGTACCAT GATTGGCTAT
CTTTTTGGCG CTTATGCCAT TCCCAAATAT ATATCACAGG AAAAGGCTTT TACCTATTCT
GCATGGCTGG GCATACTCAT TTCACTTCTG GCGATCTTTG TCCCCGGTAC AGGTTCCATC
GTATTTATCG CTTTACTAGG CCTTTCTAAT GCATTATTAT GGCCTGCAAT ATGGCCCCAG
GCCCTAAAAG GGTTAAAAGG GAAGATGCTA AACAGAGGCT CTGCTATTTT GATTATGGGC
GTTGCCGGTG GGGCCATCAT GCCATTAGTA TATGGCGTTT TAGCTAAGTA TACCAATAAT
CAATATGCCT ACATCATTCT AATTCCCTGC TATCTTTTTA ATCTATACTA CAGCCTGAGG
GGCAGACGTT CAATGCCGGA TGAAATTTAA
|
|---|
| Protein sequence | MPNETLTIQT PAKKALTMQI ITIGAFFFIF GFITWVNGTL IPYLRIACEL EEWQAYLVTF
AFYISYTVMA IPSSKILERT GMVKGMRVGL IIMAIGCALF IPAALMRYYP LFLLGLFVVG
TGTTLLQTAV NPYITLLGPP EKAAQRISMM GICNKFAGVI APLILGAIIL KNSDGLIAEL
QQMADAARKL RLDSLAHAVI LPYIALTLIL LAIAYLIKFA HLPEIEASLP ARPDKGTIDL
KQAAKLRLNF ILGFIATFST VGLEVIAGDT IGNYGIYHGL SLNIAKNLTA YTLASTMIGY
LFGAYAIPKY ISQEKAFTYS AWLGILISLL AIFVPGTGSI VFIALLGLSN ALLWPAIWPQ
ALKGLKGKML NRGSAILIMG VAGGAIMPLV YGVLAKYTNN QYAYIILIPC YLFNLYYSLR
GRRSMPDEI
|
|---|
| |