| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3968 |
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| Symbol | |
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| ID | 8255102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4778334 |
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| End bp | 4778924 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644937632 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003094221 |
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| Protein GI | 255533849 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGAGCA GGCAACTTAA AAATGAAGAA GAACTATTGG CCAGGATTGC CATGGGCGAT
CAGCGTGCAT TTACGGAAAT CTTTGATTTT TATCAGCGTT ATGTATATGA TTATGGCCGA
AAGCTGACTA AATCCGAAGA TCAGGCGAGT GAGATTGTAC AAGATGTATT CTTAAAAATA
TGGCTCAACA GAGAAAAATT CAACGAGGTG AAAAATTTCG GGGCATATCT AAACCGGGTA
GTAAGAAACC ATTCCATAAA CGTGATACGC AAATTGGCAC AAGATGCCAG ATCGGCCACA
CAGCTTAAAA TTAATACTCT GGAATCTGAC AATTCCACAG ATAAAATACT AGATTACAAT
GAAAGTAACA GGATATTGAC CCAGGCTGTC GAAAACTTAA GTCCCCAGCA ACGAACAGCA
TATACCCTTT GCCATATACA AGGATTGAAA TATGAAGAAG TTGCAAAAAA GATGAACGTT
TCAAGCCGTA CTGTACAGGC ACATATGCGT CAGGCTTTAA AACACATACG TGAGCACTTC
AGTAAACATG CACTAGCCTA TCCGGCGCTA TTTGCTGTAC TATTTAAATA A
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| Protein sequence | MESRQLKNEE ELLARIAMGD QRAFTEIFDF YQRYVYDYGR KLTKSEDQAS EIVQDVFLKI
WLNREKFNEV KNFGAYLNRV VRNHSINVIR KLAQDARSAT QLKINTLESD NSTDKILDYN
ESNRILTQAV ENLSPQQRTA YTLCHIQGLK YEEVAKKMNV SSRTVQAHMR QALKHIREHF
SKHALAYPAL FAVLFK
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