| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3834 |
|---|
| Symbol | |
|---|
| ID | 8254968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4605508 |
|---|
| End bp | 4606725 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644937498 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_003094087 |
|---|
| Protein GI | 255533715 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTAA TAGTACGCTT TGTATCTTAT TGTATTTTGG CTTTCACCTG CTTTACGGCA
GCTGCACAGC AACGTATGCT GCAGATTACA GATACAACCT ATGTGCCTGT TGTTGAAGAA
GCAACAACTT TTTATAACCA CAATTACATG TATAAGGCCA GGTTGGATTC TATTCAGAAA
ATAGTTCCGC TAAGCTACAA TGAATATGTA CAGAAGTACA TTGATATTTA TGCAGGCCGT
AAAGATATGA TGGGCAAAAT GCTTGGGCTT TCGGGCTATT ATTTCCCAAT CTTTGAAAAG
GCTTTAAAAA GCTATAACAT TCCGGAAGAG ATCAAATACC TGCCAATCAT TGAATCCTCG
ATGAACCCAC ACGCAGTTTC GAGGGTTGGG GCAACCGGCT TATGGCAGTT TATGTTTGCT
ACAGCTAAGG GGTATGGACT GAATATGGAT AACTTTGTGG ATGAACGTAA AGACCCTATA
CAGGCCAGCT ATGCAGCTGC GGCATATTTC AGAGATGCTT ATGAAGAACT GGGCGACTGG
TTGCTGGCAA TTGCAGCCTA CAACTGCGGA ATGGGAAATG TAAACCGTGC AATTGCAAAG
GCAGATTCCA GGGATTTCTG GGAGATCAGA CGCTTTTTGC CTATGGAGAC AAGAAATTAT
GTGCCGGCCT TTATTGCGGC TGTGTATGTG ATGAACTATT CAGGAAAACA TGAAATTAAG
GCGCAACGTA CGGTTTTTCT TAAAAATACA GACACCATCC AGGTGAACCG TTTTGTTTCT
CTCCCTTCAT TGGCAGAGGC CCTGAATATA GAAGTAGAAG AGTTGTGGAG TCTGAATCCC
TCTTATAAGA AGAAGATTGT AAACGGTTCT GAGCTTTCGC CAAAACGGGT GATTTTACCG
AAGGTGAGCC TGGCCAGTTT TACCAGGGTA TACGAATTGC TGAACGAGAC AGAAGCCGAT
GTGGATAAAC ACATTATACT GGCGTCAAAT GACAACCAGT TGAAGCGGAA GTCTAAAGCT
GAACGTAAAT CTCCGATTGT GTACCACAAA GTAGCCCCTG GTCAGAGCCT GATCGGTATC
GCCAATAAAT ATCATGTAGA GGTACAGGAC CTGAAGGTCT GGAACAATCT AAAAGGATCA
ACAATTGTTC CGGGGCAACG TCTGAAAATT TATAGCAACA CTGAAGGAAG GCATACAGCA
GCCCCGCTAA GAGGTTAA
|
|---|
| Protein sequence | MRLIVRFVSY CILAFTCFTA AAQQRMLQIT DTTYVPVVEE ATTFYNHNYM YKARLDSIQK
IVPLSYNEYV QKYIDIYAGR KDMMGKMLGL SGYYFPIFEK ALKSYNIPEE IKYLPIIESS
MNPHAVSRVG ATGLWQFMFA TAKGYGLNMD NFVDERKDPI QASYAAAAYF RDAYEELGDW
LLAIAAYNCG MGNVNRAIAK ADSRDFWEIR RFLPMETRNY VPAFIAAVYV MNYSGKHEIK
AQRTVFLKNT DTIQVNRFVS LPSLAEALNI EVEELWSLNP SYKKKIVNGS ELSPKRVILP
KVSLASFTRV YELLNETEAD VDKHIILASN DNQLKRKSKA ERKSPIVYHK VAPGQSLIGI
ANKYHVEVQD LKVWNNLKGS TIVPGQRLKI YSNTEGRHTA APLRG
|
|---|
| |