| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3789 |
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| Symbol | |
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| ID | 8254923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4544665 |
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| End bp | 4548174 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644937453 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003094042 |
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| Protein GI | 255533670 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.474486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAGAA TTTATACGAA GAAACTGGTC ATGCCCGAGC GGTATGCCCG TAAAATTTTG
CTAATTATGC GATTTACCAC CGTTATATTA ATAGCATCCC TTATGCAGGT GAGTGCCACC
ACGCTGGCCC AAAAAATCAG TCTGTCTAAA ACAAACGCTT CTTTAAAAGC AGTAATTAAA
GAGATAAGGG CACAAAGTGG TTACGAATTC ATCTATACCG AAAGCGTTTT AAAGGAAGCA
TTACCTGTAA CGATCAACAT TAAAGCACTT AACTTTGAGG AGGTGCTGGA GCAGATTTTC
AGGAATCAGC CGCTGAGTTT TTCTATTGAC AGCAAAACGG TCATCATCAA ACAAAAAGAT
AAAAACTTAT TTGAACAATT AGCTGCCCGA TTTCAGGCAA TTGATATTCG GGGTCGTGTG
CTGGATGAAA ACAGCCAGCC GATGTACGGA GCTACAGTGA AGGTTAAAGG AACCAGCAGG
GTTGCCACAA CAAATGGCGA GGGTATATTT ACACTCAGGG GTATCGATGA GAATGCTACA
CTGGAAGTTT CTTACCTGGG ATACCAGGTA AAAGAAATAA AAGTAACCAA AGATACCCGC
GACCTTACAA TCAGGCTGCT GCTTGCCGAC AGCAAACTGA ACGAGGTGGT TGTTACTGCA
TTGGGTATCA AGAGAGAAGA AAGGGCATTA GGCTATGCCA TTACTAAAAT AGACAGCAAC
CAAATTACCA ATGCACCAGC GGGAAACTGG ATTGATGCCC TTTCGGGAAA GGTTGCAGGT
TTAAATATGG TAAGGTCAAA CGGAGGACCT GCCGGTTCAA ACAAAATTAT TTTGCGCGGA
GAGAACAACC TGACAGGAGG GGCCGACAAC GAAGCCCTGA TTGTAATAGA CGGCGTGGTC
GTAAATAATG GCAGTGGCAG AAGAACTGCA ACTGGAGGAT CTGCAGCTGC ACCATCGGAT
GGGATACAGC CAACTGATTT TGGAAGCGGG ATTAATGACC TTAATCCTGA AGATATTGAA
AGTATTACGG TGCTTAAAGG CCCCGGTGCT GCAGCGTTAT ACGGGCAACG CGGCGCAAAT
GGAGCGATCA TTGTCACTAC CAAATCGGGC AGTGCAAAAA GCCGCGGTGT AAGTATAACC
CTAAACGCTA ATGCCGCATT TGAAAGCGCT AACCGGTGGC CAGATTTACA ATATGAATAT
GGACAGGGGC AAAGTGGTGC CGATACCTAC GGATATGGCC TGAACAGTGC CAGTAGTTTG
GCTTTTGGCC CAAGGTTTAA CGGACAGTCT TTTGTACAGT ACGACCCGGT AACACAGGCT
GCGGCTACAG AAGCTACACC CTGGGTTCCT TATAAAAACC AGATCAGGGA GTTTTTTGAA
ACCGGGAAAA CTTTTACAAA TTCTATCAGT ATTAGCGGAA ATATCAAAAA GAATACGACT
TTCCGTGTTT CTGCAACACA TGCTGATAAC GAGTGGATCA TTCCGAATAC AGGCTATAAA
CGTAACAATA TCTCCTTCTC GGCCAACAGT AAAATTACTT CAAAACTAAG CCTGACTGTA
AAAGGAGGGT ACACGAATAG GGAAAGTGAT AATTTACCCG GAATGGGGTA CGGAAACCAA
TCCGTAATGT ACTGGTATGT GTTTTGGGTG CCAAATGCCG ATATCAATTG GTTGCGAAAC
TATTGGACAA ACGGTAAAGA ATACAGGGAA CTTAAAGATG TTTTTACTGC ATCGCCAGAA
AATCCTTACG CCATTTCGTA TGAGTTTATC AATGGTTCAA AACGCAATGG CATAACTGGT
AATGCACAGT TAAATTATGC TTTTACCAAA GCGCTGAGCT TGCAGTTAAG GGCAACTTTA
GACCGCACCA TTGATGACAG GGTGCAAAAA CGCCCGTGGA CGGCGGCGCG CTTAGCTACT
GGTTCTTATC GTACCCAGGA TATTGTTTCT AAAGAATACA GTGGTGATTT CTTATTGAAG
TACAACAAAC AACTGAATAA GGATTTTAGT ATTACCGCAA CAGTTGGTGG CAGTATGCTT
AAGAACCGCT ATTCCAAGAA AGAAACAAGA GCTGATGGAT TGATAGAGCC AAATGTTTAT
AGCTTTGATA ATGCTGAAAA CCCGCTGGTA TATGTACCAG ATACTTCACG TTTCTCATTG
AACAGTGTGT ATGGCTTGTT TTCTGCTTCC TATAAAAGTT ATCTTTATTT AGATGTAACC
AGTCGCATGG ATTGGAACAG TACCCTGGCC AATCCATTTA GAGAGAAAAG CACAGGTTTT
TTTTATCCAT CTGCGAACCT GAGCTTTATT GCCTCCGATT ATTTTAGTTT ACCTAAAACC
ATCAGCTTTG CAAAGCTAAG ACTTTCGGTT TCTCAGGTGG GTAGCGGTGG TACAATACCT
TACCGTACTG CCTATTTATA TGGTTTGGCA GCTAACGGAA CCTACCCAAA TGGTTCGTTA
CAAAATCCAA CTACAATACC CAATCCTGAT TTACAACCGC TAAAAACTAC TGCTTACGAA
ATAGGTGCAG ACATTAAGTT GTTTAAGAAC CGTTTGGGTA TTGATATTGC TGCTTATGCA
GGAAATACCA AAAACCAGAT TTTAGAACGT ATTGTCGACC GCTCATCAGG TTATACCCGT
CAGATTATTA ATGCCGGGCA GATCGATAAC TCTGGTTTGG AAGTGGCAAT GAACGGCACA
CTCATACAAA GCAAGAGTTT TAAATGGACG ACTTTTATGA CTTTTGCTAC CAATAAAAAT
AAGATCATTG CCTTAGCCAA TAACGATACT ACCGTATTGT TGCGTTCAAG TGCAGTAGGC
GGTGCGCAAA TTATAGCAAA GGTTGGTGGT AGCATGGGCG ATATGTATGG TACAGGGTTT
TTACGTGCTC CGGATGGGCA GGTAGTCTAT AACCCTACTA CAGGTATTCC GCTGCTGTCA
GGCACTCCGG TCTATCTGGG CAATACCATT CCCAAATATA AAGCGAGTAT AGGTACTGAG
TTTAGCTATA AACAATTTAA GTTAAATGTA TTGTTTGATG CACAAAAAGG CGGGGTGGCC
CATTCCTATA CCCATGGTCG CCTGGCCGAT TTTGGTAAAC TTTCAGCTAC CTTACCTGGT
CGTTACAGCG GTATAACCGG TAAGGGTGTT GTGGATAACG GGGATGGAAC GTATAGCCCA
AATACAACTA TAGCTACAGA TATTACCTCG TTTTATAATA CGACTATGGG AACCCTTAAT
GGCGAAGGCG CAACCTATAA AACCGACTTT ATTAAATTCA GGGAAGCGAG GTTTGATTAT
ACGCTGCCAA AATCGCTGTT AAGATCAATA AAAATATCCA GGGCAACTAT AGGTGTGTAT
GGGCGTAACC TCGTGATCTG GTCCAACTGG CCTATGTTCG ATCCTGAGTT TGGTACTTTG
AGCGGTACTG ATATTGTACA GGGATTTGAG ATCGGACAGT TCCCCTCAAC CCGTACTTAT
GGTTTTAATT TAGTGATAGG TATTAATTAA
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| Protein sequence | MYRIYTKKLV MPERYARKIL LIMRFTTVIL IASLMQVSAT TLAQKISLSK TNASLKAVIK
EIRAQSGYEF IYTESVLKEA LPVTINIKAL NFEEVLEQIF RNQPLSFSID SKTVIIKQKD
KNLFEQLAAR FQAIDIRGRV LDENSQPMYG ATVKVKGTSR VATTNGEGIF TLRGIDENAT
LEVSYLGYQV KEIKVTKDTR DLTIRLLLAD SKLNEVVVTA LGIKREERAL GYAITKIDSN
QITNAPAGNW IDALSGKVAG LNMVRSNGGP AGSNKIILRG ENNLTGGADN EALIVIDGVV
VNNGSGRRTA TGGSAAAPSD GIQPTDFGSG INDLNPEDIE SITVLKGPGA AALYGQRGAN
GAIIVTTKSG SAKSRGVSIT LNANAAFESA NRWPDLQYEY GQGQSGADTY GYGLNSASSL
AFGPRFNGQS FVQYDPVTQA AATEATPWVP YKNQIREFFE TGKTFTNSIS ISGNIKKNTT
FRVSATHADN EWIIPNTGYK RNNISFSANS KITSKLSLTV KGGYTNRESD NLPGMGYGNQ
SVMYWYVFWV PNADINWLRN YWTNGKEYRE LKDVFTASPE NPYAISYEFI NGSKRNGITG
NAQLNYAFTK ALSLQLRATL DRTIDDRVQK RPWTAARLAT GSYRTQDIVS KEYSGDFLLK
YNKQLNKDFS ITATVGGSML KNRYSKKETR ADGLIEPNVY SFDNAENPLV YVPDTSRFSL
NSVYGLFSAS YKSYLYLDVT SRMDWNSTLA NPFREKSTGF FYPSANLSFI ASDYFSLPKT
ISFAKLRLSV SQVGSGGTIP YRTAYLYGLA ANGTYPNGSL QNPTTIPNPD LQPLKTTAYE
IGADIKLFKN RLGIDIAAYA GNTKNQILER IVDRSSGYTR QIINAGQIDN SGLEVAMNGT
LIQSKSFKWT TFMTFATNKN KIIALANNDT TVLLRSSAVG GAQIIAKVGG SMGDMYGTGF
LRAPDGQVVY NPTTGIPLLS GTPVYLGNTI PKYKASIGTE FSYKQFKLNV LFDAQKGGVA
HSYTHGRLAD FGKLSATLPG RYSGITGKGV VDNGDGTYSP NTTIATDITS FYNTTMGTLN
GEGATYKTDF IKFREARFDY TLPKSLLRSI KISRATIGVY GRNLVIWSNW PMFDPEFGTL
SGTDIVQGFE IGQFPSTRTY GFNLVIGIN
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