| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3579 |
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| Symbol | |
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| ID | 8254701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4257656 |
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| End bp | 4260835 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644937231 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003093832 |
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| Protein GI | 255533460 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.157085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.780186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGC TTTTACTCTG TTGGTTGCCA TTAATTCTCT TTCCTTTCTT TAAAGGATAC
GCTCAGGTTC CGGTTTCCGG AACTGTTAAA GATACACAGG GAGGTGTTCT GCCTGGTGTA
AGTATCAAGC TAAAGGGTAC TACCACTGGA GTAACTACAA CTTCGTCTGG TACTTATAGT
ATTAGTGTAC CTGATGCCAG TGCAGTGCTG GTATTTTCAT TTATCGGCAT GGAAAGCCAG
GAAATCCAGG TGTCTGGAAA AAGGACAATT GACGTTGTAC TTACTGAGCA GATGGCGGCA
CTAAAGGAAG TATTGGTAAT TGGTTACGGT TCTCAATCTC GAGAGACAGT TACCACGTCG
GTGACAAAGC TGGATAATAA GGTGCTTGAA AACGTGCCTT ATGCCAATTT AACATCTGCC
ATGCAGGGAA CCCTGTCAGG TGTTCGGGTG CAAAGTACCT CGGGGCAACC CGGAGATGCT
TCCCGTGTGG TAATCAGAGG CGGAACCTCT ATTAATAATC CGAATGGTGC CGCACCACTT
TATATTGTAG ATGGGGTAAT CAAATCAAAT ATAAATGATA TCAATTCACA GGATATAGAA
TCTATGCAGG TGCTGAAAGA TGCGGCGGCT ACTGCTATTT ATGGGGCCAG AGGTTCAAAT
GGAGTAGTGA TCCTGGTAAC TAAATCAGGT AAATCCGGTA TAGCCAGGAT TAATTATAAT
TATGATCTTA CCATTTCTGA TCTTGGGAAA GGCTACGATA TGGTATCTGC CAGAGATTAT
ATTTATTTTC AAAGGTTAGG AATTGGGGCA AGAGGTACTG CCGATCCCAG CCAGTTGACA
AAACTTGGTC TTGCCAGTAG TGCGGGTACC GGTAATGACC TTACCAATAA TACGGCATTT
ACACCACAGT ATTTATCTGA TGCGAACCGA TATAAACTCA ATGAGGGTTG GGAAAGTATG
CCTGATCCGA TAGACCCTAC TAAAACTATT ATTTTTAAAA ATACAGATTT TCAGGATGTT
GTTTATCGGA CGGCGCTTTC TAACAACCAT ACCTTGTCGG GCTCGGGAGG GACTGATAAA
GCTACTTTCA GTGCGAGCCT TGGATACCAG TCTAATGAGG GGATTGCCAT TTTTACGGAT
TATAAACGAC TTTCATTTAA TTTAAATGGT GATTTTAAGG TAAACGAAAA GCTTAAGATC
TTTGGCAGGG TGATGTACTC CAATTCCTCC GGAAGGACAG TTACGGATGC CGGAAGTAAT
GTGAGTAATG TATTTGCCAG ATCTGCGACT ATACCGGCAA CCACTAAATA TAAATTTGAG
GATGGAACAC TAGCCCCTGG TTTAAATTCA AGTTTAGGTA ACCTGGAGTA TTTTTTTAAT
ACACAGGACT TGAAAAACAG CCTGGAAAAT CTGACGATGG TTACAGGTGC ACATTTTGAT
ATCTTGCCGG GGCTAAGTTT TGACCCGCAA ATCTCTTTAT ATAAAATTAC CTCGGACGGA
CGTTTTTTTC AAAAGGCTTA CCTTAACGGA CCAGGGCAAC TGGTGAATTC AAGAAACGCC
ACCGGTAGTT ATGCCAAACA GATTCAGGAA CAGGCGGATG CGGTTTTTAC TTATAAAAAA
AACCTTAAAG ATGCACACCA TTTAGAAGCG AAAATTGGTT TTTCTGCTTT CTGGAGAACG
ACTGCGGGAT TAAATGCAAG CGGAAGGGGG GCATCTACGG ATCTGATCCC AACTTTAAAT
GCTTCTGCCG TACCCGTATC GGTTGGTGGT GATGAAACTA ACCAATTGAT TTTGGGCTAC
TTTTCTAGAA TTAATTATGA TTATAAAGAG AAATACCTGC TTTCACTAAA CGCCAGGTAC
GACGGGGCCT CTAACCTGGG GACTACGCAC AAATGGGGTC TTTTTCCGGG GGTATCTGTA
GGTTGGAATA TTCATAAAGA AGATTTTTGG ACTGCATTGC CTGAACGTTT ATTCACGCTG
AAACTACGTG GAAGTTATGG CGTAAATGGA AACATCAGTG GTTTGGGCCC TTACCAGTCG
CAAGGGCAGT ATAGTGTAGG TGCTCAATAC AATGGAATAG CCGCAGTTCA AAATACAACG
CTGGCTAATG CAGATTTGCG TTGGGAGCAA TCAAAGACCT TCGATGTGGG ATTTGATCTT
GGGGTATTAA ATAACAGAAT TAATATATTG TTTGATTATT ACAGACGCAG GACGGATAAC
CTGCTGACCA ATTTCAGTTT GCCACAATCT ACGGGCTTTG CCAGTGTGTT AACCAATTTA
GGTAGCCTCC AGAACAAAGG TATAGAACTA GAGCTGAGTG CGAAGATTCT TCCTGAAAAG
TCTGATTTTC AATGGATTTT GTCTTTAAAT GCGTCCAGGG TTAAGAATAA AATACTTAAA
CTTCCAAACA ATGGTATAGA GAACAATCGC ATTGGGGGTG TATATGTTTG GGATTCATCC
AGAAACGATT ACGCTTGGTT AGGAGGGTTG CAGGAGGGCG GAGAGATTGG TGATTTATAT
GCTTATAAGC AACTAGGTAT CTATGCCACA GATGCCGAAG CCCAAAGAGG CCCGAAAGAC
ATGTTGGTGG TAGGGACAGC CAAAACAAAA TTTGGTGGTG ACGTAAATTG GCAAGATGCA
GATAATAATG GGGTAATAGA TGAAAGGGAC CGTGTGTTTG TGGGTAATAT TTATCCAAAA
TGGACTGGTG GGATGGCCAG TACCATGACC TATAGAAATT TCGATCTATA TGTGAGAATG
GATTATACCA CGGGGCATAC CATTTATAAC TATACCCGGG CAATGATGAT AGGGCAGTTT
GTTGGAGAAA ACGGTTTTGT TTCTGATGTC CTCCGATCCT GGCAAACCCA GGGACAGCAG
ACAGATATTC CGAGAATTTA TTGGGCTGAC CAACAGGCGC AAAATAATTT ATTCAGGGGT
AATTCAGCAT ATTACGAAGC GGGTGACTTC CTGGCTTTAA GGGAAGTCAC ACTCAGTTAT
AATTTCTCTC CGGAATTTTT GAAGAAAATA AAAATAGCGA ACCTGAGGCT AAATGCTACA
GGTAGCAATC TTCATTATTT CACCAAATTT AAAGGACTGA ATCCTGAAGA GGGGGGAGAT
GACCGGGGCA GATATCCAAT TCCCAGAAAC ATCATCTTCG GAGCAAACAT TACATTTTAA
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| Protein sequence | MKKLLLCWLP LILFPFFKGY AQVPVSGTVK DTQGGVLPGV SIKLKGTTTG VTTTSSGTYS
ISVPDASAVL VFSFIGMESQ EIQVSGKRTI DVVLTEQMAA LKEVLVIGYG SQSRETVTTS
VTKLDNKVLE NVPYANLTSA MQGTLSGVRV QSTSGQPGDA SRVVIRGGTS INNPNGAAPL
YIVDGVIKSN INDINSQDIE SMQVLKDAAA TAIYGARGSN GVVILVTKSG KSGIARINYN
YDLTISDLGK GYDMVSARDY IYFQRLGIGA RGTADPSQLT KLGLASSAGT GNDLTNNTAF
TPQYLSDANR YKLNEGWESM PDPIDPTKTI IFKNTDFQDV VYRTALSNNH TLSGSGGTDK
ATFSASLGYQ SNEGIAIFTD YKRLSFNLNG DFKVNEKLKI FGRVMYSNSS GRTVTDAGSN
VSNVFARSAT IPATTKYKFE DGTLAPGLNS SLGNLEYFFN TQDLKNSLEN LTMVTGAHFD
ILPGLSFDPQ ISLYKITSDG RFFQKAYLNG PGQLVNSRNA TGSYAKQIQE QADAVFTYKK
NLKDAHHLEA KIGFSAFWRT TAGLNASGRG ASTDLIPTLN ASAVPVSVGG DETNQLILGY
FSRINYDYKE KYLLSLNARY DGASNLGTTH KWGLFPGVSV GWNIHKEDFW TALPERLFTL
KLRGSYGVNG NISGLGPYQS QGQYSVGAQY NGIAAVQNTT LANADLRWEQ SKTFDVGFDL
GVLNNRINIL FDYYRRRTDN LLTNFSLPQS TGFASVLTNL GSLQNKGIEL ELSAKILPEK
SDFQWILSLN ASRVKNKILK LPNNGIENNR IGGVYVWDSS RNDYAWLGGL QEGGEIGDLY
AYKQLGIYAT DAEAQRGPKD MLVVGTAKTK FGGDVNWQDA DNNGVIDERD RVFVGNIYPK
WTGGMASTMT YRNFDLYVRM DYTTGHTIYN YTRAMMIGQF VGENGFVSDV LRSWQTQGQQ
TDIPRIYWAD QQAQNNLFRG NSAYYEAGDF LALREVTLSY NFSPEFLKKI KIANLRLNAT
GSNLHYFTKF KGLNPEEGGD DRGRYPIPRN IIFGANITF
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