Gene Phep_3577 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3577 
Symbol 
ID8254699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4254982 
End bp4256133 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content44% 
IMG OID644937229 
Productglycosyl hydrolase BNR repeat-containing protein 
Protein accessionYP_003093830 
Protein GI255533458 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4409] Neuraminidase (sialidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.169929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.71691 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAG AAAAAAAACA CCCGTTTACC GGCTTCAGTT TAGGTGCTGC ATGTCTGTTA 
TGTATGTTAT TTTTTGGACT GGCCGGTAAC CTGCTGGCAC AAACAGGCCC GGGAAAGGAA
ACGGTTCTTA CTTTAAATCC CGGGCAGGAT AACCCCCGAA ACAGTGAAGG GGATTTTTTG
ACTTTAAAGG ATGGGCGGGT CATGTTTGTA TATAGTCATT ATACGGGAAC ATCTTCCAGT
GATCATGCTT CGGCTTTCCT GGCGGCCCGC TATTCTGCTG ATGGTGGAAA AACCTGGACC
AATAGCGATA GGGTAATCGT AGAAAAGGAA GGTACGATGA ACGTAATGTC TGTTTCTCTA
TTGAGGTTAA AAAATGGGAA AATCGCTTTG TTCTACCTGA AAAAGAATTC TACTTCCGAC
TGTATACCTA TGGTTCGTTT TTCAAGTGAT GAAGCTAAAA CCTGGACTGA TCCAATAGCC
TGCATTACAG ATAAAAAGGG CTATTTTGTG CTGAACAACA GTCGGGTAAT TCAATTAAAA
AGTGGGAGGA TACTTTTGGC GGTAGCATTG CACCAGACTC CAGAACAAGC CAAATGGTCT
AACAGCGGTA CTTTATGGAG TTATTACTCG GACGATAATG GAAAAACCTG GAAGCCGGGG
CAGCAGGTGG CCAATCCAGA TGGGGTGGTG ACACAGGAGC CTGGTGTGGT GGAACTGAAA
AACGGAAATG TTTTAATGTT CATCAGGACA GATGCGGGAG TCCAGTATTT GTCCTATTCA
AAAAACAAGG GACAAAGTTG GAGCCCTGCG CAGCCTTCTA CGATTAAATC ACCTGTTTCT
CCGGCTTCTA TTAAAAGGAT TCCGTTGACA GGCGACCTGA TATTGGTTTG GAACAATAAC
GGGGGCGACA ACCCGCTGAT TAAGGGAAAA AGGACACCCC TTAATGTGGC CATTTCAAAA
GATGAGGGGA AAACCTGGCA AAATATTAAA ACGGTAGAGG ATGATCCGAA TGGATGGTAC
TGCTATATCG CGATCTGTTT TTCAGGTAAG CATGTGCTTT TAAGCTATTG TAGCGGGGTG
CAGCCCAGAT TTTCGCACTT AACCGTGACA GATATTAAAC GTTTAAGCCT GGATTGGGTA
TATGGAAAAT AA
 
Protein sequence
MKKEKKHPFT GFSLGAACLL CMLFFGLAGN LLAQTGPGKE TVLTLNPGQD NPRNSEGDFL 
TLKDGRVMFV YSHYTGTSSS DHASAFLAAR YSADGGKTWT NSDRVIVEKE GTMNVMSVSL
LRLKNGKIAL FYLKKNSTSD CIPMVRFSSD EAKTWTDPIA CITDKKGYFV LNNSRVIQLK
SGRILLAVAL HQTPEQAKWS NSGTLWSYYS DDNGKTWKPG QQVANPDGVV TQEPGVVELK
NGNVLMFIRT DAGVQYLSYS KNKGQSWSPA QPSTIKSPVS PASIKRIPLT GDLILVWNNN
GGDNPLIKGK RTPLNVAISK DEGKTWQNIK TVEDDPNGWY CYIAICFSGK HVLLSYCSGV
QPRFSHLTVT DIKRLSLDWV YGK