| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3554 |
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| Symbol | |
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| ID | 8254675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 4229893 |
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| End bp | 4230468 |
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| Gene Length | 576 bp |
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| Protein Length | 191 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644937205 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003093807 |
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| Protein GI | 255533435 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.642665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTAC AACAATACAG TGATCAGGAA TTAATTAAGT TATACCTTAA TGGTGATGAG
ACCGTTTTGG AAGAACTTCT GAAAAGACAC AAGTCTAAAA TTTACACATC TATATATCTT
TTGGTAAAAG ATCAGTATTT AGCTGAAGAT ATATTTCAGG ATGCTTTTAT AAAAGTGATC
AACACGTTAC GGTCCGGGCG CTACAATGAG GAAGGCAAAT TTTTACCATG GGTGATGCGC
ATTGCACACA ACTTGGTGAT AGATTATTTC AGACGTGAAA AACGGGCCCC GGTAATTACA
AGTGCCGATG GCACAGACGT TTTTAACCTG CTTCAGTTTC ATGAAGAAAG TGCAGAAGAT
AAAATGCTGA GGGAACAGAC CCATTTTGAC CTGAGGACAA TGATCCATTT ATTGCCCGAC
GATCAGAAAG AGGTTTTAAT TATGCGCCAT TATGCAGACC TTAGCTTTAA GGAGATTGCA
GACCTGACGG AGGTGAGCAT AAATACCGCA CTTGGAAGGA TGCGTTATGC ACTGAATAAC
CTCCGTAAGA TGATGAAAGT GAAAGAAATC TCTTAA
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| Protein sequence | MKLQQYSDQE LIKLYLNGDE TVLEELLKRH KSKIYTSIYL LVKDQYLAED IFQDAFIKVI
NTLRSGRYNE EGKFLPWVMR IAHNLVIDYF RREKRAPVIT SADGTDVFNL LQFHEESAED
KMLREQTHFD LRTMIHLLPD DQKEVLIMRH YADLSFKEIA DLTEVSINTA LGRMRYALNN
LRKMMKVKEI S
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