Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3457 |
Symbol | |
ID | 8254577 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4110259 |
End bp | 4110876 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644937109 |
Product | RDD domain containing protein |
Protein accession | YP_003093712 |
Protein GI | 255533340 |
COG category | [S] Function unknown |
COG ID | [COG1714] Predicted membrane protein/domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.052067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGATCCCA ACGATAGTGA ATATACTGTA GTCATCAATG GAAAGCCTGA GGGGCCGTAT AGGCTAGATC AGTTAAAAAT ATTGCACATT GAGACCGGAA CTTTTATCAG AAAGCCGGGT ATGGACGATT ATAAAGAAGC GCACGAGTTC CCGGAACTGC GTGCGCTTCT TGGGTTTACC TATCAACAAA CCGCACCGCA GTATTTTGCT GCTTTCGATC AGCGGCTGCT GGCCTGTGTA ATTGATTATT TTTTTATATT CACGGCATAC GTGCTGCTGA TCCTGGTCAG TTTTATTTTT GTGGAAGAAA AAACCCAGCG CATCATGATA GCCCTGTCGG GAAGCCCTTT AATTCTGGTT GCTAAATTCT TTTATGGCAG CATTACCGAG GCTTCTGAAA AACAGGCCGG ACTTGGAAAA CGCCTGATGA ATATCAGGGT GACAGATTTA AATGGTAATC GCATCAGCTT AAACAGAGCT TATGCCCGCA ACCTGGCTAA ATTATTGTCA ACAGCCCCTT TCTTTTTTGG ATACCTTTAT AGTTTCCTGA ATAAAAAACT ACAGTGTTTT CACGATATCG TATCGGATAC TCTGGTGATA AAGGACAGGC TCATATAA
|
Protein sequence | MDPNDSEYTV VINGKPEGPY RLDQLKILHI ETGTFIRKPG MDDYKEAHEF PELRALLGFT YQQTAPQYFA AFDQRLLACV IDYFFIFTAY VLLILVSFIF VEEKTQRIMI ALSGSPLILV AKFFYGSITE ASEKQAGLGK RLMNIRVTDL NGNRISLNRA YARNLAKLLS TAPFFFGYLY SFLNKKLQCF HDIVSDTLVI KDRLI
|
| |