Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3392 |
Symbol | |
ID | 8254511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4033446 |
End bp | 4035947 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644937044 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_003093648 |
Protein GI | 255533276 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTAACT TCATCAAAAC ATTTATCACT ATGAAATCTA TTGCCTCTTT ATTGGTTTGC CTGTTTGCCT GTATTTCATT GTCTGCACAG CAAAAAGATT CAACTGGTAA AACAGTTGCT GTTAAGGATA CAGGAGGCAG TTTTGTGCGC AGGATGCAGG CCTTCGCCAA AGTATCGGCA AAAAGTAGTG CAGATGATTT TGCTGCCGAC AAGGCGGCTA TAGCACAAAA CAGGATTATC GATGAGATCA AAAAGGCCAT GCATATAGCC AAGGTCTACC TAAGTACGGG GATTGATACA CTGGGTACAA AAGAGCAGCT GGCCAGGATT GAAAGAGACT TTACCATGGC AGGAGATGGT GTGCTGACGA ATAAGGGAAC CGCCCAGACC TTTAGGAACC TTACTGCCAC GTCCAAAATT TTAACTGAGT TACTGAGTAA AGCGGGCGCC AGAAAAACAA AGCTTGACTT TCACCAGCAA CAATTGAGCA GCTTCCGGTA CCAGCTGGAC TCACTGCTGA GTGCGCCAGA CCTGTTTAAG TTTTCGACAG ATTCTGTGGT ACTCAGCAAA TACATAGGAC AGATTGCTGT GCTTGCCCAT GAGGTCCATC CGGTAGACAG TGCATTGAAA CAGGCTGGAA ATAATGTGCA GAGCTTACTT AACCAGGTAA ATATGCTGGT TTTTAGACTG CAGACGGCCC TGGAAGAAAT ACAGTTGTAT CAAAAAGATA TGGCAGGAAA TACTTTCAAA AGAGAATTTA ACAATATTTG GGAGTCACCG GGGCATTACC GGTCATTTAA GGAAATCCTC CGGCAGGCAG AGGCAAAAGG CTTGCTTACC CTGATATTTT ATGTCCAAAA CAATACTGGT AAGCTGGTTG TCCTTCTCTT ACTTGTTTTT GCCTCTTTCT TTTATTTGCG TTCGTTAAAG AATATATATA GAGAGAATGG GCTGCTAACA CCGGATCTGG AAGGGCAGCT GGTACTCCGG TATCCGCTGC TCTCGGCCCT GATTATCGTG GTCAACCTGT TTCAGTTTAT GTTTGTCTCA TCGCCCTTCA TTTTAAACGT AGTTTTCTGG ACAATAGCCT CGGTTAGTCT TACGCTGATA TTTAATAAAT TTATCACCCG GTACTGGATG AGGGTTTGGC TGATGATGCT CCTGCTTTTT CTGGTCGCCG CCTTTGACAA TATGGTGCTT CAGGCTTCAC GTACCGAGAG GTGGTTTATG TTGATCATAT CGGTAACAGG GACTATTGCT GGAATCCTTG TATTGCTGAA AGGCCGTAAA CAGGAACTGA AGGAGAAACT GATACTTGTT GCCATTGGCT TTATGGTTTT GCTGGAAATT GGTTCAACAC TGGCCAATGT GCTTGGAAGG TATAACCTGT CTAAAACTTT GCTCATCAGT GGTTTTCTGA ATGTAGTGAT TGCCATCCTC TTTTTGTGGA CCATCCGGTT GATTAATGAG GGACTTTTCC TGGCTTTCAG CGTTTATACG CATCAGGACA AAAAGCTGTT TTACCTCAAT TTTAAAAAGG TTGGGACAAA GGCCCCGATA CTGTTTTATT TGCTGCTTAT TGTAGGCTGG GTTGTGTTAT TTGGTCGTAA TTTTGCTGGT TTCGATTATA TTGTAGACCC CTTTAAGGAT TTTTTTGGGC GTGAGCGTAC CATCGGTAAT TATACTTTCA GCATCAATAC CCTGGTGTTG TTCATTGTTA TTATGACCAT TTCGGTCATT GTATCAAAAA TCGTATCCTT TTTTGCTTCC GATCAGCACT TCAGCACCGG CAAAAATGAT CAGGAGGAAA AGCAGGGACT TGGCAGCTGG TTGTTGCTGG TCCGTATTTC CATTCTGGCG ATAGGCTTGT TTTTAGCTGT TGCAGCTGCT GGCATTCCGG TAGACAGGAT CACCATTGTG CTTGGTGCCT TAGGTGTGGG TATAGGTTTT GGTCTGCAAA CGCTGGTCAA TAACCTCGTT AGCGGGCTGA TCATTGCTTT TGAAAAACCG GTTAATGTGG GCGACATTGT AGATGTTGAC GGTCAGGGCG GCATTGTAAA ATCGATAGGC TTCAGAAGCA GTGTAATTGC TACCTGGGAT GGTGCCAATG TAGTGATGCC CAATGGCGAC CTGTTAAATT CCCATCTGAC CAACTGGTCG CTGGGTGGAA ACCGGAAACG GATATCGATA CAGATTGGGA TTGCTTATGA TGCAGATCTT GAGCAATGCC GGCAATTACT TACTGAATTG TTGAATGCAG AGCAGCGGGT AAGTAAAAAT CCGGCTCCGG TTGTTCAGTA TGAACAGTTT AGCAGCAGTA CCATTGATGT AAAAATTTAT TTCTGGACAA AGCATCTGGC GGAAGCTTAT GCAACAAGAA GTGCACTGAT CGTAGCGATC AGTAATGCCT TTAAGACCAA GGGTATAGTG ATTCCATTTC CACAGCAGGA GGTTTATCAC CACTTTCCTG ATAAGAATGA CGAAACCGGC AGGGCACTTT AG
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Protein sequence | MLNFIKTFIT MKSIASLLVC LFACISLSAQ QKDSTGKTVA VKDTGGSFVR RMQAFAKVSA KSSADDFAAD KAAIAQNRII DEIKKAMHIA KVYLSTGIDT LGTKEQLARI ERDFTMAGDG VLTNKGTAQT FRNLTATSKI LTELLSKAGA RKTKLDFHQQ QLSSFRYQLD SLLSAPDLFK FSTDSVVLSK YIGQIAVLAH EVHPVDSALK QAGNNVQSLL NQVNMLVFRL QTALEEIQLY QKDMAGNTFK REFNNIWESP GHYRSFKEIL RQAEAKGLLT LIFYVQNNTG KLVVLLLLVF ASFFYLRSLK NIYRENGLLT PDLEGQLVLR YPLLSALIIV VNLFQFMFVS SPFILNVVFW TIASVSLTLI FNKFITRYWM RVWLMMLLLF LVAAFDNMVL QASRTERWFM LIISVTGTIA GILVLLKGRK QELKEKLILV AIGFMVLLEI GSTLANVLGR YNLSKTLLIS GFLNVVIAIL FLWTIRLINE GLFLAFSVYT HQDKKLFYLN FKKVGTKAPI LFYLLLIVGW VVLFGRNFAG FDYIVDPFKD FFGRERTIGN YTFSINTLVL FIVIMTISVI VSKIVSFFAS DQHFSTGKND QEEKQGLGSW LLLVRISILA IGLFLAVAAA GIPVDRITIV LGALGVGIGF GLQTLVNNLV SGLIIAFEKP VNVGDIVDVD GQGGIVKSIG FRSSVIATWD GANVVMPNGD LLNSHLTNWS LGGNRKRISI QIGIAYDADL EQCRQLLTEL LNAEQRVSKN PAPVVQYEQF SSSTIDVKIY FWTKHLAEAY ATRSALIVAI SNAFKTKGIV IPFPQQEVYH HFPDKNDETG RAL
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