Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3318 |
Symbol | |
ID | 8254437 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 3935733 |
End bp | 3937745 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936970 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_003093574 |
Protein GI | 255533202 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.563923 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGGAT CTGAAGTAAA AACCAATATG GATGCCTTGG TTAAGGAGCT TAACCAGCAC AGTTACAATT ATTATGTTTT GGCAATGCCC ACCATTGCAG ATTACACTTT TGATAAAAAA CTGGAAGAAC TTGCACAACT GGAGCTTGCA TACCCCGAGT TTGCAGATCC CAATTCGCCT ACCCGGAAAG TTGGCGGCGA CATTACGAAA ATTTTCACCA CGGTTCCGCA CAAATGGCCA ATGCTATCAC TTGGCAATAC TTACAATGAA CAGGACCTCC GCGACTTTGA TGAACGCATC AAAAAAGCCA TAGGTGAAAG TTTCGAATAT GTTTGTGAAC TTAAGTTCGA CGGACTTTCC ATCAGCCTTA CCTACGATGG ATCAAAACTG GTTAGAGCAG TAACACGCGG AGATGGTGCC AAAGGCGACG ATGTGACCGC CAATGTAAAA ACCATAAATA CTATTCCACA TCAGTTAAAA GAAGGAGATG TACCCCCTCT ATTTGAAATC AGGGGTGAAA TTTTTATGCA CCGTGCTGCC TTTGAAAGGT TAAATAAGGA ACGCGAGGAA CTTGGCGAGG TCCAATATGC CAATCCCAGG AACTTTGCGG CCGGAACCGT TAAGATGCAG GACTCTAAGG AAGTGGCCAA ACGTCCCCTG GATTGTTTCC TTTATTCACT AAATACAGAC AAAAATTATT TTAAAACTCA TTGGGAAAGC TTACAGGCAC TAAAGAGGTG GGGATTTAAT GTTTGTGAAC ATACCAAACT GACCAATAGC ATTGAAGATG TACGCTCATT TATAAAACAC TGGGAGAACG AACGTTTCAA ATTATCTTAT GACATAGACG GAATTGTAAT TAAGGTAAAC AGCTATGCAC AGCAACAGGA ACTGGGCTTT ACGGCCAAAT CTCCACGCTG GGCCATTTCC TATAAATACA AAGCACAGGA AGTCGAAACC ATTTTGGATA AGGTAACCTA CCAGGTGGGC CGGACTGGTG CCGTTACCCC TGTTGCCAAC CTGAAACCTG TACAACTTGC CGGAACAACC GTAAAAAGGG CAACATTGCA CAATGCCAAT GAAATAGAAA GGCTGGACTT ACACGAGGGG GACAGCGTCT TTGTTGAAAA AGGCGGAGAG ATCATCCCAA AAATCATGAA CGTAAACCTG GATAAACGCA AGGCCGGGGC ACTTAAGATT ATATATCCTA CCGTATGTCC GGAATGCGCT ACGCCCCTGA TCAGAAAAGA AGGTGAAGTG GCTTTTTACT GTCCGAATGA TGAGGCCTGT CCGCCACAGA TCATTGGAAA AATCCAGCAC TTCATCAGCA GAAAGGCCAT GAACATTGAT GGCCTCGGCG ACGAGACCAT CGAAACCTTT TATCAGCGCG GATTAATTGC CCACATCAGT GACCTCTATA CCTTACATGA AAAAGCAGAG GAACTGAAAA CGCTGGAACG TTTTGGTGAG AAATCTATTG AAAATATGCT GCATGGAATT GAGCTTTCTA AGCAAATGCC CTTTGAGAAA GTATTATTTG GCCTTGGAAT AAGGTATGTA GGTGAAACAG TGGCTAAAAA ACTAGCTTAT GGTGTAAAAA ATGTTGACAA GCTTGCTTCA GCAAGCCTGG AAGAATTGAC AGCAATAGAT GAAATTGGCC AGCGTATAGC GGAAAGTATT ATTGAATATT TTGGCAAAGC AGAACATTTA CATCAAATAA ACCTTCTAAA ATCATACAAT TTAAAATTTG AAGTCGCAGA AAATGAAATT ACACTGCAAA GTGATAAATT AACTGGAAAA ACATTCGTAA TTTCGGGCGT TTTTGAGAAT TATAGCAGAG AAGAACTCAA AGACATGATT GAAAGTAATG GTGGTAAGAT TTTAAGCGGG ATCTCTGCAA AACTTAATTA TCTTGTTGCC GGAGATAACA TGGGGCCATC TAAACTCGAA AAAGCGAAAA AGTTAAATGT CCCGCTTATT TCGCAGGAGG ATTTATTAGA GCTATTGAAG TAA
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Protein sequence | MSGSEVKTNM DALVKELNQH SYNYYVLAMP TIADYTFDKK LEELAQLELA YPEFADPNSP TRKVGGDITK IFTTVPHKWP MLSLGNTYNE QDLRDFDERI KKAIGESFEY VCELKFDGLS ISLTYDGSKL VRAVTRGDGA KGDDVTANVK TINTIPHQLK EGDVPPLFEI RGEIFMHRAA FERLNKEREE LGEVQYANPR NFAAGTVKMQ DSKEVAKRPL DCFLYSLNTD KNYFKTHWES LQALKRWGFN VCEHTKLTNS IEDVRSFIKH WENERFKLSY DIDGIVIKVN SYAQQQELGF TAKSPRWAIS YKYKAQEVET ILDKVTYQVG RTGAVTPVAN LKPVQLAGTT VKRATLHNAN EIERLDLHEG DSVFVEKGGE IIPKIMNVNL DKRKAGALKI IYPTVCPECA TPLIRKEGEV AFYCPNDEAC PPQIIGKIQH FISRKAMNID GLGDETIETF YQRGLIAHIS DLYTLHEKAE ELKTLERFGE KSIENMLHGI ELSKQMPFEK VLFGLGIRYV GETVAKKLAY GVKNVDKLAS ASLEELTAID EIGQRIAESI IEYFGKAEHL HQINLLKSYN LKFEVAENEI TLQSDKLTGK TFVISGVFEN YSREELKDMI ESNGGKILSG ISAKLNYLVA GDNMGPSKLE KAKKLNVPLI SQEDLLELLK
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