Gene Phep_3268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3268 
Symbol 
ID8254387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3881076 
End bp3881555 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content39% 
IMG OID644936921 
Productputative transmembrane protein 
Protein accessionYP_003093525 
Protein GI255533153 
COG category[S] Function unknown 
COG ID[COG5500] Predicted integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.398918 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0684452 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAATA CTATACTATT TTTATCCATA CTTACAACTG CCCTGATGGC TGGGCTCTTT 
TATAGCTGGT CAATTTCAGT TATGCGCGGT CTGAAGACAT TGCCCGACAG GGAATTTATC
CTGTCGATGC AGGCCATGAA CCGTGCCATT CAGAATCCTC TCTTTTTTAT ATGTTTTTTT
GGTGCGGCAA TATTTTTACT GATCAGTTGT TATCAGCAAT TTGGCCCTTC ATTAAATCGG
GAGTATTATC TTTTGATAGC AGCAACCCTG ATCTATTTAA TTGGCGTACC AGGCCTTACA
ATTTTTGGTA ATGTTCCGTT AAACAACATG CTGGACAGCT TTGATGTAAA TGGTTCAAGT
GTGGATTCAC TTTCGAAAAT GAGGTTGGGA TTTGAGGCGA AATGGAATTA TTTAAACAAC
ATGAGAAGCA TCGCTGCAAT CCTGTCTACC TGTTTACTGC TTTTTGCGAA AATAGGATAG
 
Protein sequence
MKNTILFLSI LTTALMAGLF YSWSISVMRG LKTLPDREFI LSMQAMNRAI QNPLFFICFF 
GAAIFLLISC YQQFGPSLNR EYYLLIAATL IYLIGVPGLT IFGNVPLNNM LDSFDVNGSS
VDSLSKMRLG FEAKWNYLNN MRSIAAILST CLLLFAKIG