| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3144 |
|---|
| Symbol | |
|---|
| ID | 8254262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3751957 |
|---|
| End bp | 3752523 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644936796 |
|---|
| Product | RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_003093401 |
|---|
| Protein GI | 255533029 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACTT ATGGTTCATA TACCGATCTG GAACTGGCAG CTTTGCTAAG AGGCGGGGAT
CAATATGCTT TTTCCGAAAT ATATGACAGG TATATGCCTT TGCTTTTGCG TCATGCAGTA
GATATGCTAC ATGATGAGGA TCAGGCGCAG GATGTAGTTC AGGATATTTT TCAGATGTTG
TGGGAAAAGG CAGGCGAACT GGAAATACAT ACCTCTTTTT CTGCTTTTCT GTATAAGGCT
ACAAGGTTCA GGGTACTTAA GCAAATCAGG CACAGTAAAA TTGCAAGCCA ATATACCGAG
CTGGTAAAAA CCGAATTCGA AAAAGGGGTA GCCAGTACTG ATGAGGCGAT TGATGAAAAA
GAGCTGGCCT TTAAAATTGA AAAGGGCCTG GCAAAGCTTC CGGCAAAAAT GAGGGAAGTT
TTTGAACTGA GCAGAATGCA GGATCTGTCG CATAAAGAGA TTGCAAAGCA ACTTCATTTA
TCAGACCATA CGGTAAAGCG CCAGGTAAGT AATGCCCTTA AAATCATGCG TGAAAGTCTG
AATAAAGGCC TTTCGTTATT TATTTAA
|
|---|
| Protein sequence | MTTYGSYTDL ELAALLRGGD QYAFSEIYDR YMPLLLRHAV DMLHDEDQAQ DVVQDIFQML
WEKAGELEIH TSFSAFLYKA TRFRVLKQIR HSKIASQYTE LVKTEFEKGV ASTDEAIDEK
ELAFKIEKGL AKLPAKMREV FELSRMQDLS HKEIAKQLHL SDHTVKRQVS NALKIMRESL
NKGLSLFI
|
|---|
| |