Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2939 |
Symbol | |
ID | 8254050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 3503659 |
End bp | 3504528 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644936587 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003093199 |
Protein GI | 255532827 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0806864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.433201 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCTC AACTGCTCAA AGTTTCCAAT ACGCTGGTCA ACTCATTTAG TGCCAGAAGA GATAAAGTAC CTTATATCAA CAACCGCTGG CATTACCATG CTGAAGTGGA GCTGATCTAT TTCAAAAAAG GCAATGGCAC CCAGTTTATC GGCGATAGCA TCAAGCGTTT CAATTCGGGG GATATTGTAT TGGTAGGTGC CCATTTACCG CATTACTGGA AATTTGACGA CATTTATTTT GATGAAGGTG AGCAGAACAA TGCCGATGTG GTGGTGGTCC ATTTTTGTGA AAATTTCTGG GGCAACCATT TTCTTTCGCT GCCCGAAAAT AAAGGCATCA GGCTGACCCT GGAAAAAGCC CAGCGCGGGA TACAGATCAG GGATAACAGC AAGCGGCAGA TTGGGGGCCT GATGGAAGAC ATATTGCAGG CAACGGGCCC ATCAAGGATT ATTTTATTGA TGGAAGCCTT ACTGGCCATA GAGGGCAGTA CGCAGGACAA ACCTTTATCT TCTATGGGTT TCCGCAACAA TTTCGAAGAA ACGGAAAATG ACAGGATCAA TGCCATCTAC AACCATTCGC TGATGAACTT TAAGCGGAAG ATCCCGATGG AAGAGATGGC TGCAGTGGCG AACATCAGTC CGAATTCCTT TTGCAGGTAT TTTAAATCCA GGACACGGAA AACCTATACC CAGTTTATCA GCGAGATCAG GGTTGGTCAT GCCTGCAAAC TGCTGATTGA AGACAGCATG AACGTAAAAC AGATCTGTTA TGAAAGCGGC TTTCATAATT TTGCCAGCTT TCATAAACAT TTTAAGATCA TTACCGGGCA AAGCCCGCTC AACTACCAGA AGTCATACCT CAGCAAATAA
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Protein sequence | MKPQLLKVSN TLVNSFSARR DKVPYINNRW HYHAEVELIY FKKGNGTQFI GDSIKRFNSG DIVLVGAHLP HYWKFDDIYF DEGEQNNADV VVVHFCENFW GNHFLSLPEN KGIRLTLEKA QRGIQIRDNS KRQIGGLMED ILQATGPSRI ILLMEALLAI EGSTQDKPLS SMGFRNNFEE TENDRINAIY NHSLMNFKRK IPMEEMAAVA NISPNSFCRY FKSRTRKTYT QFISEIRVGH ACKLLIEDSM NVKQICYESG FHNFASFHKH FKIITGQSPL NYQKSYLSK
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