| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2895 |
|---|
| Symbol | |
|---|
| ID | 8254005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3455442 |
|---|
| End bp | 3456008 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644936542 |
|---|
| Product | RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_003093155 |
|---|
| Protein GI | 255532783 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.136027 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAGC ACCTTGTATT TTCAGATCAG GAACTAATGG AAATGATTCG GAAGGACGAT
CATCATGGCT TTGAAATGCT TTATCGGCGT CACTGGCAGA AACTATATCA AAGTGCATTT
AATATTTGCC GGGACAGGGA AATCTGCATG GATGTTTGCC AGGAAATATT TATCTGGTTT
TGGGAACACC GGAATTCAGT AAACTTAATC AGTACTGTAC ACAGTTATCT GCTCAGTGCG
GTGAAGTACA AAATGATCAG CTATATCAGG AAGGATAAGG TGAAAGCGAA TTTTTTAGAG
ATTGCTAAAA GCCTGCCGGA AAGTTATACG ATAGAGGAAA ACATTCAGGT AAAAGAATTG
CAGAGCTTCA TTACCCAATT TGTGGGCACA CTTCCCGATA AATGTGGGGA AATTTTCAAG
ATGAGCCGCA ATGAACACCT CAGTAATAAA GAGATTGCAA GAAAGCTGGG TATTTCGGAA
AAAACAGTAG AGAACCAGAT TACCATTGCA CTTAAGAAAC TTAAAGGATC TTTGGGTAAC
CTGAGCTGCT GGTTTCCGCT GATCTGA
|
|---|
| Protein sequence | MQEHLVFSDQ ELMEMIRKDD HHGFEMLYRR HWQKLYQSAF NICRDREICM DVCQEIFIWF
WEHRNSVNLI STVHSYLLSA VKYKMISYIR KDKVKANFLE IAKSLPESYT IEENIQVKEL
QSFITQFVGT LPDKCGEIFK MSRNEHLSNK EIARKLGISE KTVENQITIA LKKLKGSLGN
LSCWFPLI
|
|---|
| |