Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2605 |
Symbol | |
ID | 8253712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 3050901 |
End bp | 3052292 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644936255 |
Product | Alpha-L-fucosidase |
Protein accession | YP_003092871 |
Protein GI | 255532499 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3669] Alpha-L-fucosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00783953 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGC ATACATTTTA CATCACACTC AGCGTGTCAT TATTCCTGAT GACTATATCC CCCGGCAATT TTGCCCAAAC CTATCAGCCG GAATGGCAGT CGCTCGATAA AAGGCAGACC CCCAGCTGGT GGACTGATGC CAAGTTCGGT ATTTTCATTC ATTGGGGCCT GTACTCCGTT CCGGCTTACG CACCTGTTAA CGAGGTTAAA GGAGTTTACG AAAAATATGC GGAACATTAC GAAAACAGGC TGATACAAGG CAATAAATTA TTTACCGACC ACCATAAGCA ATTTTATGGG GAGCAGTTTA AATACAGTGA TTTTGCGGCA ATGTTTAAAG CAGAATACTT TAAGCCAGAA GAATGGGCCG ATCTGTTTGC TAAATCTGGG GCAAAATATG TGGTGTTGAC TTCCAAGCAC CATGATGGAT TTTGTTTATG GCCAAGTGCT GAAAGTAATA AATGGAACAG TGTGGATGCC GGGCCTCACC GTGATCTGGC TGGCGATCTT ACAAATGCAG TTAAAGACAA AGGCTTAAAA ATGGGTTTTT ACTATTCATT GCTAGAATGG AACAACCCGC TTTATAAGCC CCAAACCATA GACAATTATG TAGAAAACCA CATGTCACCT CAAATGAAGG ACCTCGTAAC CCGATATAAG CCAGAGGTGA TCTTTGCAGA TGGAGAATGG GATTACCCAT CAGAAAAACT CAGGAGTCCC CAATTCCTTT CCTGGTTGTA TAACGAATCG GCGGTAAAAA ACACAGTTGT TGTCAATGAC CGATGGGGAA AAGAAACCCG CAGTAAACAT GGCGGCTATT ACACTACCGA ATATGACCTG GTACACGATG CCAAAGGTAT TGGCGAAAAA GCAGCACATC CATGGGAAGA GAGCCGTGGC ATAGGTACCT CTTATGGTTT TAACCGGTTT GAAACATTGG AGCATTATTT TACAAGTAAA CAGCTGGTAG ACCTACTGAT TGATAAAGTG AGTAATGGCG GTAACCTGCT GCTCAATATT GGTCCGGATG CCAATGGCTT AATCCCTATA ATTATGCAGG AGCGCCTGCT GGATATAGGT GCCTGGCTAA AGGTGAACGG AGAGGCCATA TACGGCAGCA GTTCCTGGAT AGGCGGGGCA GCAAACCAAA AGGACAAAGG TATTTTTTAC ACCCAAAAAG GTAAAGATAT TTATATAATA TGCACAAAAT GGCCACAAAC TGATATGACA ATCGGAACGA TTAAAAAGGC AGGCAAAGTT AGTTTGCTGG GTTCCGCTAC ACCTGTCAAG TCGGAGATAA AGAGAGGAGA ATTACACATA ATCCCTCCCA TCCTGAATCC GGCAACAATG CCATGCCAGT ATGCCTGGGT ATTTAAAGTA AAAGTGATAT GA
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Protein sequence | MKKHTFYITL SVSLFLMTIS PGNFAQTYQP EWQSLDKRQT PSWWTDAKFG IFIHWGLYSV PAYAPVNEVK GVYEKYAEHY ENRLIQGNKL FTDHHKQFYG EQFKYSDFAA MFKAEYFKPE EWADLFAKSG AKYVVLTSKH HDGFCLWPSA ESNKWNSVDA GPHRDLAGDL TNAVKDKGLK MGFYYSLLEW NNPLYKPQTI DNYVENHMSP QMKDLVTRYK PEVIFADGEW DYPSEKLRSP QFLSWLYNES AVKNTVVVND RWGKETRSKH GGYYTTEYDL VHDAKGIGEK AAHPWEESRG IGTSYGFNRF ETLEHYFTSK QLVDLLIDKV SNGGNLLLNI GPDANGLIPI IMQERLLDIG AWLKVNGEAI YGSSSWIGGA ANQKDKGIFY TQKGKDIYII CTKWPQTDMT IGTIKKAGKV SLLGSATPVK SEIKRGELHI IPPILNPATM PCQYAWVFKV KVI
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