| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2454 |
|---|
| Symbol | |
|---|
| ID | 8253561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2849201 |
|---|
| End bp | 2849875 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936104 |
|---|
| Product | transcriptional regulator domain protein |
|---|
| Protein accession | YP_003092720 |
|---|
| Protein GI | 255532348 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.02572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.811367 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTCC TGATTGTAGA AGATGAAAAA ACACTGGCTT ATGAAATGGA AGACTTTTTG
AAAAAGGCCT TTTATATCTG CGATCTGGCA CATAACATCA GCGATGGGCT CGAAAAAATC
AGTGCCAACA GCTACGACTT TATTTTACTC GACCTCGGAC TGCCAGATGG GGATGGGCTA
ACCCTGCTCC CAAAAGCAAA AAAACACAAT CCTGATGCAG CTTATATCAT TTTAACGGCC
CGGGGAAACC TGGAAGACAG GATTGCAGGG CTCGATCTGG GGGCCGACGA TTACCTGCCC
AAACCTTTCT CCCTGCTCGA ACTGCAATCC AGGATGCAGG CCATTGCCCG CCGTAAATTC
AATCTTAAAG AAGAGTTATT GCCCCTGGGC GATTTTAAGC TCGACCTGCA AAAAAGGCTC
ATCTTTTTTA ACGGACAGCA AATCGAGCTT TCCAGAAAGG AATTTGATAT CCTCAGCTAC
CTTTTCCTGC ACAGCAACCG CGTGCTTACC CGCATGCAGC TGAGTGAACA CATCTGGGGT
ACCTTTGCTG ATGACGATTA CGATTCCAAT TATATAGATG CGCACATCAA GAACATCAGA
AAAAAGCTGA ATGCCTGGGC AGCTACAAAT TTCCTGGAAA CAGTACGTGG TGTAGGTTAC
AGAATAAAGA AATAA
|
|---|
| Protein sequence | MKVLIVEDEK TLAYEMEDFL KKAFYICDLA HNISDGLEKI SANSYDFILL DLGLPDGDGL
TLLPKAKKHN PDAAYIILTA RGNLEDRIAG LDLGADDYLP KPFSLLELQS RMQAIARRKF
NLKEELLPLG DFKLDLQKRL IFFNGQQIEL SRKEFDILSY LFLHSNRVLT RMQLSEHIWG
TFADDDYDSN YIDAHIKNIR KKLNAWAATN FLETVRGVGY RIKK
|
|---|
| |