Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2230 |
Symbol | |
ID | 8253336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2580026 |
End bp | 2581810 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644935879 |
Product | glycoside hydrolase 15-related |
Protein accession | YP_003092496 |
Protein GI | 255532124 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.904069 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAGA GACACACCTA CCAAACGGGA ATTATTGGAA ATTGCGCTTA TCTTGCCCAC ATCAATAAAA ATACAAATGT AGACTGGCTT TGCTGGCCAA GGTTTGACAG CAGCTTTGTA TTTGGGGGCT TGCTGGATAA AGAAAAAGGC GGGGAATTTT CCGTATTACC AGCTGGTGAG TATATATCGC GGCAGTATTA TCTGGAAAAT ACCAATGTCA TTTGTACCGA AATAAGCAAT CCGGAAGGAA AATACAGGGT GATGGACTTT GCCCCCCGTT TTTATCAGTT TGAACGGTAT TATAAACCCC TGATGCTGAT CAGAAAAATA GAGCCCCTGG AAGGTAATCC CAGGATAAGG GTGAGATGTA AGCCGGTATA TGAATATGGG CGTAAAAAAC AAAAGGGCAG CAGGGGCAGC AACCACATTG AATTTAATGG GGATGATGAG GATATGCAAC TGAGCACCAA TATTTCATTA AGCTATATTG AAGATGAGAA ATATTTTGCT TTGAATGAGC CCAAATACCT GATACTGACT TACGGGCATG AACTGGATGC ACCCATTATC AGCACTGCAG AGCGCTTTTT AAGGGAAACC ATTAAATACT GGCGGACCTG GATCAAACAT TCTACGATTG CCGGTTTTTA CCAGTCGTAT GTCATCCGTT CAGCTTTGAC CTTAAAAATT CATCAGTATG AGGATACAGG GGCCATTATT GCAGCCAGTA CAACCAGCTT ACCGGAATCG GATGGGAGCG GCAGGAACTG GGACTACCGC TATTGCTGGA TGCGCGACAC TTATTATGTG ATCACTTCAT TAAATCACAT TGGCCACTTT GAAGAGATGG AGCGGTATTT CAATTACATT ACAGATATTT CTTTCAGGGA TGATGAACGA TACCAGCCTT TGTTTGGCAT TGCCGGAGAA AGGGTACTTA CCGAGCGAAA ACTGGGGCAT CTGAAGGGCT ATATGGGCAA CAAGCCAATC CGCGTAGGTA ACCAGGCTTA TGAACATATA CAAAATGATA TTTATGGACA GGTTCTGGTT TCTATGCTGC CTTTATACAC AGATCACCGT TTTATTTATT CTGAAAGAAA GGATTCTGAA AAATGGCTGG ATTATCTGCT GAAAAAGATA GAACGTACAA TTGATGAGAA AGATGCAGGG ATATGGGAAT TCAGAAACAT TGCCAATACC CATTGTTATA CCAATCTGTT TCAATGGGCT GGTGCCAATG CAGCCTTAAA AATGGCCAGA ACAATAGGGA ATAAATTGTA TGAAGAACGT GCACAGATAT TAATTGATAA AGCCGCCAGG CACATAGAGG ACTGTTATGA TCCGGTACGT AAGGTTTACA ACCATGCTGT AGGCAGTCCG TATCTGGATG CCAGTACCCT GCAACTCATA TTAATGAATT ATTTAGATCC TTTATCACAA AAAGCCAAAG ATCATCTGAT TGCCCTGGAG CAGGAACTAA AGGCCGAAAA CGGACTGTTC TACAGGTATT TACATAAGGA TGATTTTGGC CGGCCTAAAA CCACCTTTCT AATCTGTGCG TTCTGGTATG TGGAGGCCCT GGCCTGTGTT GGGCGCCTGG ATGATGCCAT CAAGGAGTTT GAATCTATCA TTAAATATGC CAACCACCTG TTGTTGTTTA GTGAGGATGT TGATGAAAAT GACGGCAGTC AGTGGGGCAA TTTTCCGCAG GCTTACAGTC ATGTTGGCCT GATGAATGCC GCGCACAGGA TTGCGATAAA ACTGGACAGA CCTGTGTTTC TTTAA
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Protein sequence | MTERHTYQTG IIGNCAYLAH INKNTNVDWL CWPRFDSSFV FGGLLDKEKG GEFSVLPAGE YISRQYYLEN TNVICTEISN PEGKYRVMDF APRFYQFERY YKPLMLIRKI EPLEGNPRIR VRCKPVYEYG RKKQKGSRGS NHIEFNGDDE DMQLSTNISL SYIEDEKYFA LNEPKYLILT YGHELDAPII STAERFLRET IKYWRTWIKH STIAGFYQSY VIRSALTLKI HQYEDTGAII AASTTSLPES DGSGRNWDYR YCWMRDTYYV ITSLNHIGHF EEMERYFNYI TDISFRDDER YQPLFGIAGE RVLTERKLGH LKGYMGNKPI RVGNQAYEHI QNDIYGQVLV SMLPLYTDHR FIYSERKDSE KWLDYLLKKI ERTIDEKDAG IWEFRNIANT HCYTNLFQWA GANAALKMAR TIGNKLYEER AQILIDKAAR HIEDCYDPVR KVYNHAVGSP YLDASTLQLI LMNYLDPLSQ KAKDHLIALE QELKAENGLF YRYLHKDDFG RPKTTFLICA FWYVEALACV GRLDDAIKEF ESIIKYANHL LLFSEDVDEN DGSQWGNFPQ AYSHVGLMNA AHRIAIKLDR PVFL
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