| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2208 |
|---|
| Symbol | |
|---|
| ID | 8253314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2542666 |
|---|
| End bp | 2545392 |
|---|
| Gene Length | 2727 bp |
|---|
| Protein Length | 908 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644935857 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003092474 |
|---|
| Protein GI | 255532102 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0778173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAT TATTTACATT GACACTTTCA GGGATTACCT TCCTGCTGCT GTTCCTGTTT
GGACCTGCTC CTACAGCTGA AAAACGTTTT GAACACCCCG GGATTGTACA GCATCCATTG
AATATAGATA CACCGGACCA GCGCAGATTT GTGAAGGTTG ACCTGGTAAA AGGAAAGTTT
ACCGAGCCTA CGGAAATGGC GGTACTGCCC AATCTGGATA TCCTTGTAGC ACAGCGCAGG
GGCGAAATTA TGCTTTATAA GCAGCAGAGC AGGACTTTAA AAGAAGTACT TAAGCTGGAT
GTTTACTTTA AAACCACGGT ATCGAATGTA AATGCTGAAG AAGGTTTGCT GGGCATTGCC
CCTGATCCGA ACTTTGCCGC AAACCAGTAC ATATATGTTT TTTACAGTCC CTTTAAAACT
TCAGTAAACC GTTTGTCGCG TTTTAAACTG GTTAACGACC GGATCAACCC GGCTTCAGAA
AAGAAGGTCC TGGAGTTTTA TTCGCAGAGA GAGATCTGCT GCCATACTGG TGGCTCTATT
GCTTTTGGGC CGGATGGCCT GTTGTATGTA TCTACAGGCG ACAACTCCAC TCCTTTCGAT
GTGCCTAAAC AAACCTATGT AAATAAGGGC TATGCGCCTT TGGACAACCG TCCCGGATTA
CATCAATATG ATGCGCGCAG ATCGGCAGGG AATACCAATG ACCTTAGGGG TAAAATATTG
AGGATTAGGG TAAAAGCTGA TGGTACTTAT AGTATTCCTG ATCGTAATCT GTTTCCAAAA
AATGAACCTA AAACCAAGCC TGAGATTTAT GTAATGGGTG ACAGGAATCC TTACAGGATA
TCGGTAGACC AGAAAACAGG CTTTTTATAC TGGGGCGAGG TTGGGCCGGA TGCCTCTGCA
GATAATGAAC TGAGGGGCCC AAGGGGTTAT GATGAAATTA ACCAGGCCCG GAAGGCCGGG
AATTTTGGCT GGCCTTTATT TATTGCGAAC AATTATCCTT ATAGGGCCTT TGATTATACG
AATGGACAAA GCGGGGCGGC TTTTGATGCT TTGGCGCCGG TGAACAACTC GCCTAACAAT
ACCGGTTTAA CCCAACTGCC AAAAGCAGAA CCAGCTTATA TCTGGTATGC CTACGGGGCT
TCATCCGAAT TTCCACAGGT AGGCGCAGGT GGGCGGACAG CTATGGCGGG CCCGGTTTAC
CATACCAAGA CCGGACTGAA CCCTTATCCG GCTTATTACA ATGGCAAGCT GATCATTTAT
GATTGGGTAA GGGGTTGGGT AAAAGCCGTA AGTATGTCGC CCGAAGGTGA TTACCTGGGT
ATGGAACCTT TTCTGAGCAA TATTTCCCTT TCTGCCCCTA TTGACATGGA ATTAGGCCCG
GATGGTAAAT TATATGTTCT GGAGTATGGT AAGGGCTGGT TTACCAAAAA CCCGGATGCA
GGTATTTCGA GGATTGATTA CCTTAAGGGG AACCGTCCTC CGGTGATGGA AAAATTTGAA
GTGCTGCAAA CGAGCGGTTT GTTGCCTTAT AAGCTGCTGG CGAGCGTAAA AGCCAACGAT
CCGGATGGCG ATGCCCTTAC TTATGTATGG AGCCTGGGCA AAGGGGTTAA AAAAACAACC
AATAAGCCGG AGCTGGAATA TACTTTTACA AAGGCCGGAG AATATCCGGT TAGTGTGAAG
GTGGTTGATG CCTCAGGTGC TGTTGTTTCC AGTAATGTTG TCCCTGTTTT TGCCGGGAAT
GAACAACCAA AGATTGACAT TCAGCTTTCC GGAAACAAAA GTTTTTATTT TCCCGGCATA
CCTGTTGACT ATAAGGTATT GGTTTCGGAT AAGGGGGCAG CAGTTCATAA AAACAGGGTA
TACATCTCCA GTACGTATAC AGAAGGGCTG GACCTGGCCG GTGCCCAGCT TGGGCACCAG
GAAGCCGCAC AAACCCTGGT GGGTAAATCT TTAATGCTGA AAGCAGATTG CAGTACCTGC
CATAAAATTG CGGCAACCTC CATAGGCCCT GCGTTTACCA GGGTCTCGGC TAAATACCAG
CAGAACAATA AAGCGGTAAC TTACCTTAGC GGTAAAGTGA TGAAGGGAAG CAGTGGTGTA
TGGGGTGAAG TGCCTATGCC TGCACACGCT ACCATGAAGG AAACAGAAGT AAGACAGATT
GTAGAATGGA TCATGTCGCT GGCCGCAAAA GCCAGTGGGG CCCCTTCCCT GCCTATGCAG
GGTAAAATTA TACCTCCGGC TACGGTAAAT ACCAATAAAC CGGTGCTGAG CCTAAAGGCT
ACTTATGCAG ATATGGGCAT GGCCGGCGTA AGGTCGTTGA GCAGTACCAG TGTAGTTAAC
CTGCGCAGTA ATGTCATTGA TGTAAAGGAT ATTACTGATA TTTCACAGTT TTCGCGCCGT
GACATTTCTG GTGAGATAGA ATTGCTTTTG CCAAAAAATA CGGGCTGGAT TAAGTTGAAA
CAAATTGATC TTAAGGGGAT TACTTCTTTT TTACCACAGG TTAAAACCAT GGCGCAGGAA
GTAGATTATG AAGTAGAGAT GAAACTGGAT AACCAGAATG GGGTATCGGT AGGTAAGGGC
CTGCTCTCTG GAAAAAATAT TGCTGTTGAT GCGGTTGCCG ATGGAAAGTT GCATGATGTT
TTTATCACTT TTAAAGGAAC AACGAAGGAT ATAAAGGAGA GGCCGTTGCT GCAAGAGGTT
GTTTTAAAAG GAAAAGGGTC GAAATAA
|
|---|
| Protein sequence | MKTLFTLTLS GITFLLLFLF GPAPTAEKRF EHPGIVQHPL NIDTPDQRRF VKVDLVKGKF
TEPTEMAVLP NLDILVAQRR GEIMLYKQQS RTLKEVLKLD VYFKTTVSNV NAEEGLLGIA
PDPNFAANQY IYVFYSPFKT SVNRLSRFKL VNDRINPASE KKVLEFYSQR EICCHTGGSI
AFGPDGLLYV STGDNSTPFD VPKQTYVNKG YAPLDNRPGL HQYDARRSAG NTNDLRGKIL
RIRVKADGTY SIPDRNLFPK NEPKTKPEIY VMGDRNPYRI SVDQKTGFLY WGEVGPDASA
DNELRGPRGY DEINQARKAG NFGWPLFIAN NYPYRAFDYT NGQSGAAFDA LAPVNNSPNN
TGLTQLPKAE PAYIWYAYGA SSEFPQVGAG GRTAMAGPVY HTKTGLNPYP AYYNGKLIIY
DWVRGWVKAV SMSPEGDYLG MEPFLSNISL SAPIDMELGP DGKLYVLEYG KGWFTKNPDA
GISRIDYLKG NRPPVMEKFE VLQTSGLLPY KLLASVKAND PDGDALTYVW SLGKGVKKTT
NKPELEYTFT KAGEYPVSVK VVDASGAVVS SNVVPVFAGN EQPKIDIQLS GNKSFYFPGI
PVDYKVLVSD KGAAVHKNRV YISSTYTEGL DLAGAQLGHQ EAAQTLVGKS LMLKADCSTC
HKIAATSIGP AFTRVSAKYQ QNNKAVTYLS GKVMKGSSGV WGEVPMPAHA TMKETEVRQI
VEWIMSLAAK ASGAPSLPMQ GKIIPPATVN TNKPVLSLKA TYADMGMAGV RSLSSTSVVN
LRSNVIDVKD ITDISQFSRR DISGEIELLL PKNTGWIKLK QIDLKGITSF LPQVKTMAQE
VDYEVEMKLD NQNGVSVGKG LLSGKNIAVD AVADGKLHDV FITFKGTTKD IKERPLLQEV
VLKGKGSK
|
|---|
| |