Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2003 |
Symbol | |
ID | 8253107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2312458 |
End bp | 2314446 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 644935652 |
Product | putative ATP-dependent helicase |
Protein accession | YP_003092271 |
Protein GI | 255531899 |
COG category | [R] General function prediction only |
COG ID | [COG3972] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.148023 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00375343 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGCTC AATTGTTTAA AAATCTCAGT AAAAATGAAC TAGGTGAAAA TATCGCCAAT AAGTTTGAAG AGTATTTAAC AAACCATTCA AATAAACAGA TCTACTTAAT TACATCCCCC TTAGGAGAAA AGTATAGTTA TGATTATGAA GATAACTGTT TGGTCATATT AATCCCAAAA CACAGAATAA TCTTTTTGAA TCTTGGAAAT AACGATGAAA AATTTCAAGA CTATTGTGAT GACTTTATTG AAGATTTAAA TTCGATTTCT GACAAATACA ACTACAAAGA ACATATAGGC CGACCAAGGG ATTGGAAAAA GAACAATACT GTTCGAATTG AAAATTTTGA CCTCAATAAT ATAGAAAGCG TTGTCGCCGA AAACTTTCTA GAAGATCTTA AATCACAAAG AATAAGCGAC TTACTTATTT CATTATTAAT CGGAAGTATT AACGACATTG AAAACATTGG ATCTGAAGTC CCAGAAACGC TGCTCGAAAA AGTTAAGAAA AACATTGTTT TATTTGATGG TGAGCAAACC AGATTTATGT ATCAGGATTT CGACAATAAA ACAATCACTA TTCAAGGGTT GTCAGGTACA GGAAAGACCG AACTTTTGTT ACATAAACTA AAAGACTTGT ATGTTAAAAC AAGTACCTCA AAGATATTTT TCACCTGTCA TAATATAGCC TTAGCGAATA CATTACAAGA AAGAGTCCCT ATTTTTTTCA ACTTTATGAG AGTAGAGAAA CAAATAGAAT GGAATAAACG ATTATGGGTT AATAGAGCAT GGGGATCTAA AGGAGACCCC AATTCAGGCA TATATAGTTA TTTATGCTAC TTTTACGACA TACCCTTCTT AAGATTTAGT CCAACAAATG ATTATAATAG AATATTCACT TTAGCATTAG ATTACATTGA GAGTATTGAC CCTAAAGATT TCGAATATGC TTTTGATTAC CTATTGATTG ATGAACGTCA AGATTTTCCA GATGTCTTTT TTCAGGTATG TGAAAAAGTA ACCAAAGAAA ATGTTTATAT AGCGGGAGAC ATATTCCAAG ACATTTTCGA GAACATTGAT AAAAAAGTCT TACAAGTAGA TGTCGTACTT AATAAATGCT ATCGAACCGA TCCTAGAACG CTAATGTTTG CTCACTCAGT AGGACTAGGC TTGTTTGAAG AAAAGAAATT AAATTGGTTT GACGACGACG AATGGAATGC ATTCGGATAT AATGTAAAAA GACTTGCTGA CAAGGAAATA CAGTTTACTA GAGAACCACT AAGAAGATTT GAAGATATTG ACACAGACAA ATTTGAAAGT GTTGAAATTA TAAAATCTAC TAAAAGCTCA AAGGTTATCA AAGCTATTGA AAGCATAATC CGAGAAGATG AAACAGTAAG CCCTAATGAT ATTGCAATAA TTATTTTGGA TGATGATAAA CAAATCTATG AATACATTGA TCATCTCTCT TTAATTATAA ACAAAAGATT CGGCTGGAGA ATAAACAGAG CACACGAAAG TAAGTCATTA ATTGATAACA CTTTATGTAT CTCAAACTCA AACAATGTTA AAGGTTTAGA ATTTCCATTT GTAATATGTA TCACTGGAAC AATTAAGCAA ACGTACAGAT ATAGAAATAT ACTTTACACA ATGCTAACCA GATCTTTTAT TAAGTCCTTT TTGCTTGTAA ACGAAAAAAA TGATATCAAA CATCTAGAGA AAGGATTAAA AATAATAAAT CAAACTAAAG CAATAAAGAC AACAGAACCT ACCCCTAAAG AACAAAAAGA AATCAAAAAC AACTTAGTTG GCTTCTTAAG CAGTTCACAG AAATCTTATA AGGAATTTCT AACTGAAATA TTTGACAAGT TAGCCATTGA GGAAACAAAA CGTAAAAATA TCGAAGACGT TTTAGTTAAT GCTAATATTG ATAAATTTGA TGAAGAACGT ACCTCTGCAT TTATAGTTTC TTTAAAGGAG TATTACTAG
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Protein sequence | MAAQLFKNLS KNELGENIAN KFEEYLTNHS NKQIYLITSP LGEKYSYDYE DNCLVILIPK HRIIFLNLGN NDEKFQDYCD DFIEDLNSIS DKYNYKEHIG RPRDWKKNNT VRIENFDLNN IESVVAENFL EDLKSQRISD LLISLLIGSI NDIENIGSEV PETLLEKVKK NIVLFDGEQT RFMYQDFDNK TITIQGLSGT GKTELLLHKL KDLYVKTSTS KIFFTCHNIA LANTLQERVP IFFNFMRVEK QIEWNKRLWV NRAWGSKGDP NSGIYSYLCY FYDIPFLRFS PTNDYNRIFT LALDYIESID PKDFEYAFDY LLIDERQDFP DVFFQVCEKV TKENVYIAGD IFQDIFENID KKVLQVDVVL NKCYRTDPRT LMFAHSVGLG LFEEKKLNWF DDDEWNAFGY NVKRLADKEI QFTREPLRRF EDIDTDKFES VEIIKSTKSS KVIKAIESII REDETVSPND IAIIILDDDK QIYEYIDHLS LIINKRFGWR INRAHESKSL IDNTLCISNS NNVKGLEFPF VICITGTIKQ TYRYRNILYT MLTRSFIKSF LLVNEKNDIK HLEKGLKIIN QTKAIKTTEP TPKEQKEIKN NLVGFLSSSQ KSYKEFLTEI FDKLAIEETK RKNIEDVLVN ANIDKFDEER TSAFIVSLKE YY
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