Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1987 |
Symbol | |
ID | 8253091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2295082 |
End bp | 2295651 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644935637 |
Product | RNA polymerase sigma factor, sigma-70 family |
Protein accession | YP_003092256 |
Protein GI | 255531884 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.11548 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00000960214 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTGATT ACAGCAAATA TTCTGATGAG GAATTGTTTG GCCTATTAAA ACAGGACGAT CAGAAAGCCT ATTTAGAGAT TTATGACCGG TATAAAGTAT TACTGCAAAA CCATGCGATA AGGAAACTTA CGGATATGGA TGATGTAGAG GATATTTTGC AGGAGCTATT TATAGATCTG TGGGATAAGC GTGCTGCCAT TTATTTAACT ACTGGCCTGG TTAACTACCT GTATACTGCA ATGCGCAACC GCATATTTAA CCACTTTTAT AAAAAGCAGC GGGAAGGAAA TTATTTAAAC TCACTTGTAG CCGTGATAGA AAGGGGGGAG TATGTAACAG ACCTTGCACT GCGTGAAAAG GAATACACCG AAATCATTAA AGCTGAAATT GACGCCCTGC CCGAGCGGAT GCGAGAGGTT TTCCTGTTGC ACCGTAACGA AGGTTTAACC TATAAGGAAA TTGCCGAGCA GCTGGGCACA TCAGAACTTA CCGTGGCAAC CCAGGTTAAA AAGAGCCTAA AAACGCTAAG ATTAAGGTTG GGGGCTACCG GATTTTCAAT GTTTATTTGA
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Protein sequence | MADYSKYSDE ELFGLLKQDD QKAYLEIYDR YKVLLQNHAI RKLTDMDDVE DILQELFIDL WDKRAAIYLT TGLVNYLYTA MRNRIFNHFY KKQREGNYLN SLVAVIERGE YVTDLALREK EYTEIIKAEI DALPERMREV FLLHRNEGLT YKEIAEQLGT SELTVATQVK KSLKTLRLRL GATGFSMFI
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