| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1932 |
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| Symbol | |
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| ID | 8253036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2234318 |
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| End bp | 2234905 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644935583 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003092202 |
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| Protein GI | 255531830 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.442091 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0192744 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGAGTTAA AAAGCAGCAT TTCGGCAAAT ACATCACAAC CATATGATGA CCAAGCTTTT
GAACAATTGT TCAAAGCACA TTTTAAGGCC TTGCACGCTT ATGCCCTGGC CTTGTTAAAA
GATGAAGATA CCGCCGAAGA AATAGTACAG ACCATGTTTT TAAAATTTTG GGAGAAAAGG
GAGCTGTTGA ATATCCAGAC CTCGGTTAAG GCCTATCTTT ATAAATGCGT TTACCACGAC
AGCCTGAACT TTTTAAAACA TGAAAAGATT AAAACAAAAT ACCAGGATTT TGCAAGCTAT
ACCATGAACA GCCATCATGA ACCCGCCTCT TCAAAAGCAG AAATGACCGA ACTGGAATAC
CAGATTGGAA AGGCCTTAAA TGAATTGCCC GAACAATGCC GTACCATATT CCAGATGAGC
AGGTTTGAAG AATTAAAATA CAGGGAAATA GCGGAACAGC TGGGCCTGTC TGTAAAAACT
ATAGAAAACC AAATGGGCAA AGCGCTCAGA ATAATGCGAC TGAAGCTGGC CGACTTCCTT
TCGCTCATTT TATTAGGCCT GATGTATTAC AGGGATTTTT TTAACTAG
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| Protein sequence | MELKSSISAN TSQPYDDQAF EQLFKAHFKA LHAYALALLK DEDTAEEIVQ TMFLKFWEKR
ELLNIQTSVK AYLYKCVYHD SLNFLKHEKI KTKYQDFASY TMNSHHEPAS SKAEMTELEY
QIGKALNELP EQCRTIFQMS RFEELKYREI AEQLGLSVKT IENQMGKALR IMRLKLADFL
SLILLGLMYY RDFFN
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