| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1851 |
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| Symbol | |
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| ID | 8252955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2140698 |
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| End bp | 2142125 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644935502 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_003092121 |
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| Protein GI | 255531749 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00783953 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.201536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAC AGAAAACAGC TTCCATGGGC AAGCTATCTC AAATTTTTAT TCTTTTAAAA
CAGGCCCTTA AAGGTGAAGA GCTCGACTTT ACACAGGGCA GTATGCGCCG CGCCGTGCTT
TTACTTGCCA TCCCTATGAT GTTGGAAATG GCGATGGAGT CTGTTTTTGC ATTGGTAGAC
CTCTATTTTG TAGGTCACCT GCACAACAGC AGCCATGCCA TCCAAACGGT AGGTTTAACA
GAATCGGTAC TCACCGTTAT TTACTCGCTG GCCATAGGTA TGAGCATGGC TGCTACCGCG
GTAGTGGCCC GCAGGGTTGG CGAAAAAGAC CCGGAAGCCG CCGGAAAAGC GGGTATGCAG
GCCATCTTTA TCGCCGTATT TTTTAACATA CTGATCAGTA TTGCCGGTTT TATTTATGCC
CGGGAAATCC TGTTGCTGAT GGGGGCTTCG GTAGAAACAG CCGATCATGG TACTACTTTT
ATGCGCATCA TGATGGGTGG AAGTGTGATC ATTGTATTGC TGTTCCTGAT CAACGGCATA
TTCCGCGGTG CGGGTAATGC TGCCATAGCC ATGAAAAGCT TATGGATCGC CAATATTGCC
AACATCATTT TATGTCCTGT ACTGATCAAT GGATTTGGCC CCGTACCTGC ATTTGGATTA
ACAGGCGCTG CCATGGCTAC CTCCATGGGC CGGGGCATAG GTGTTTGTTA CCAGCTGTAC
CATTTATTTA AAGGCAGCGG GGTATTAAAG ATCAAACTGG CTTATTTAAA ACCACACTGG
GAGCAGATAA AAGCCTTGTT AAAAATTGCC ACACCTGGTA TATTCCAGTT TGTGATCGCC
TCCTGCAGCT GGATATTTTT AGCACAGCTG GTGGCTACAA CCGGAGGAGA TCACGGTTCG
GCAGGCTATC AGACGGCCTT AAGGTTAATG ATGTTCTTTA TGCTGCCAGC CTGGGGCATG
AGCAATGCGG CTGCTACACT GGTAGGTCAG AACCTCGGTG CCAAACAGCT GGAACGCGCT
GAACAGTCGG TCATGAAAAC TGCCAAATAC ATTATTATAT ATATGTTAAT GGTAATGGCT
TTTACTTTTA TTGGCGGCAG GTTTTTCATC TCTTTTTTCA GCAATGATGT GCTGATACAA
GATGTAGCCA TAAACGCCTT GCAGATCATG AGCCTTGGTT ACATTTGCTA CGGCATGGGT
ATGGTGCTGA TCAGTACTTT TAATGGTGCC GGCGATACCT GGACACCTAC CTGGGTCAAC
TTTTTTGGCT TCTGGTTGTT CCAGATTCCC CTGGCCTATG TTTTGGCCAA ACACTTTGAC
ATGGGCCCAA CCGGCGTATT TATTGCTATT CCGGTGGCGG AAACGGGAAT TGCCCTTGCC
GGTTTCATCC TGTTCAGGAG AGGGAAATGG AAAACAGTTA AGGTTTAG
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| Protein sequence | MSKQKTASMG KLSQIFILLK QALKGEELDF TQGSMRRAVL LLAIPMMLEM AMESVFALVD
LYFVGHLHNS SHAIQTVGLT ESVLTVIYSL AIGMSMAATA VVARRVGEKD PEAAGKAGMQ
AIFIAVFFNI LISIAGFIYA REILLLMGAS VETADHGTTF MRIMMGGSVI IVLLFLINGI
FRGAGNAAIA MKSLWIANIA NIILCPVLIN GFGPVPAFGL TGAAMATSMG RGIGVCYQLY
HLFKGSGVLK IKLAYLKPHW EQIKALLKIA TPGIFQFVIA SCSWIFLAQL VATTGGDHGS
AGYQTALRLM MFFMLPAWGM SNAAATLVGQ NLGAKQLERA EQSVMKTAKY IIIYMLMVMA
FTFIGGRFFI SFFSNDVLIQ DVAINALQIM SLGYICYGMG MVLISTFNGA GDTWTPTWVN
FFGFWLFQIP LAYVLAKHFD MGPTGVFIAI PVAETGIALA GFILFRRGKW KTVKV
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