Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1810 |
Symbol | |
ID | 8252913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2108001 |
End bp | 2110490 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644935461 |
Product | PAS sensor protein |
Protein accession | YP_003092081 |
Protein GI | 255531709 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5002] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000000473758 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGATC CGATAAATGT ACTGAGTGCT GAACAATTAA ACTATATCCT CTCATTCTCC CCCACGGCTA CTGCTATTCA CGTAGGTGAA CAAGCACAAA TTCAATTTGC CAATGATGCT ATGCTTGCCA TTTGGGGCAG AGGTAAAGAA GTGTTGGGAA AAACTTTGGT CCAGGCGATG CCTGAACTGG AAGGCCAGCC ATTTGTAGAG ATGTTTGCAA GAGTCTGGCA TGAGGGCATC ACCCTTTCAG GATCGGACAC TCCGGCCGAA ATCCTGACCA ATGGAGAACT GAATACTTTT TATTTTGATT TTGAATACCG GGCCATTAAG AATGAGGTAG GAAGCGTAAT AGGCATATTG CACACGGCTA CAGATGTGAC AGAACGATAC CTCAACAGAC GTGACCTCGC GATGGCGATA CAAAATAAGG AACTGCTGGA ACGTGAGCAA ACATTGAATG AGGAATTGGC TGCATCAAAT GAGGAGCTAA GTGCCATTAA TGAAGAGCTG CTGACAAGCC GGGAAGAACT TGCCAGAATG AATGCGGAAC TGGAATCGAT GGTGCAAGAG CGGGTAAAAG CATTTGCAGA AAGTGAAGAG CGTTTCCGGT CTATGGCCGA CAACACCGAT GTATTGGTTG CCGTAGCAGA TGAAAGCGGA AGGCGGTTTT ACTTCAATAA AGCCTGGTCG AAGCTTACCG GAAGAACAGC CGATAAGCTT ATGGTTTCGG GATGGCATGA TCTGATCCAT GAGCTGGACA GGCAGCGGTT CCAGGATGTG CATGGAGCCG CGTTTGCAAA ACGGGCATCC TACTCAGATG AGATAAGAGT GCTCGGACAA GATGGATCCT ACCATTGGCT GGTAAAAAAA GGAACACCCA GATTTCTATC TGATGGAACC TTTGCCGGAT ATATCAGTTC CTGCATTGAT ATTACCCAAA GAAAACTGGA CGAGCAGAAA TTGCAGTCCC TCAATGAAAA ACTGGCAGCG TCTAATGAAG AATTTGCTGC GTTGAACGAA GAGCTGGCTA CGACGAACGA AGAGCTTGCT GCTTCTTATG ATGAGCTGGT GCTCAGTGAA GCGCGTTTCA GGAATCTGAT CAAACAAGCT CCTGTAGCGA TCTGCGTCAT TAGGGCTAAT GATCTGATGA TCACCGAAGT CAACACCGGG TATTTGGAAC TGGTCGGCAA GCAGTTGGCG CAGTTGGAAA ACCATACAAT TTGGGACGCA GTGGCAGAGG CTGCCGAAGT CTATGCGCCG CTTATGCAGC AGGTGATCTC TACCGGAATC CCTTTTCACG CCAGAGAGCA TGAGCTAATA CTGGTACGTA ATGGCATTGA TGAAACAGTA TTCGTTGATT TTGTCTATGA ACCGGTGACT GATCTGCAGG GACAAGTCAC TTCAATTATG GTGGTCGGTA ATGAGGTAAC CGATAAAGTA TTGGCCAGGA GGCGCATAGA AGATGCGGAG GAGCGCAGTC GCCTTGCGAT AGAAGCGGCT GAAATTGGCA CCTACGAATT CAGCTATATC GATGGATCCC TTACCAGCTC AGAGCGGTTT AATGAGATCT TCGGGCTTCA GGAACCGGTA AGCAGAGAAC GGGTACTGGC AACCTATCAT CCCTTAGATG AGGGTGTGAG TGAACAGGCG CACGCCATTG CCAAGCAGAC CGGACGCCTG TTTTACGAGA CACGTCTGTT GCTAACCGGT GGTGCACTCA AGTGGATACG TGTGCAGGGT AACGTTCATT ACAGCAGCGA GGGAGTGCTA AAGAAGCTGT TAGGCACCGT GATCGACATT ACTGAGTTCA AAAGATTGCA GCAGCAAAAG GATGATTTTA TTTCTATTGC CAGCCACGAA CTAAAAACCC CGATTACCAG TCTTAAAGCA TCCTTACAAC TATTAGAAAG AATGAAGGCA AATCCTACGC CAATGCTATC CCGGCTGATA GAACAGTCCA ACAGAAGCAT GGAGAAAGTT TCTGTACTGG TCGATGATTT ATTGAATGTA ACCAGGATAA ACGAAGGTCA GATGGCGCTG GTAAAAAAGA AATTTAGTTT TAATAAGATG ATAGACGAAT GCTGCTCACA GGTTAGGCAA CTGGGAACAC ATGAGCTTGT TGTGCAAGGC GTAAAGGAAC TGCAGATTGT GGCGGATGAG AACCGCATCG AGCAGGTGAT TTCAAACTTC GTAACCAATG CAGTAAAGTA TGCCACGGCC AGCAGGGAGA TTTTTCTTAA AATTGAAGAT CTTGATCAGC AGGTTAAAAT ATCGGTAAGA GACACCGGCC CCGGCATTCC AGCTAATAAA CTGCCACATT TATTTGATCG GTATTTCCGG GCCGACCAAA CGGGTGCCCA GGTCTCCGGT TTGGGTTTGG GGCTCTATAT CTGCGCTGAT ATCATCAAGC GGCATGGTGG AGAGATCGGG GTCGACAGCA TTGAAGGTGT TGGTTCAACA TTTTGGTTTA CTATTCCTAT TGGAGGATAG
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Protein sequence | MSDPINVLSA EQLNYILSFS PTATAIHVGE QAQIQFANDA MLAIWGRGKE VLGKTLVQAM PELEGQPFVE MFARVWHEGI TLSGSDTPAE ILTNGELNTF YFDFEYRAIK NEVGSVIGIL HTATDVTERY LNRRDLAMAI QNKELLEREQ TLNEELAASN EELSAINEEL LTSREELARM NAELESMVQE RVKAFAESEE RFRSMADNTD VLVAVADESG RRFYFNKAWS KLTGRTADKL MVSGWHDLIH ELDRQRFQDV HGAAFAKRAS YSDEIRVLGQ DGSYHWLVKK GTPRFLSDGT FAGYISSCID ITQRKLDEQK LQSLNEKLAA SNEEFAALNE ELATTNEELA ASYDELVLSE ARFRNLIKQA PVAICVIRAN DLMITEVNTG YLELVGKQLA QLENHTIWDA VAEAAEVYAP LMQQVISTGI PFHAREHELI LVRNGIDETV FVDFVYEPVT DLQGQVTSIM VVGNEVTDKV LARRRIEDAE ERSRLAIEAA EIGTYEFSYI DGSLTSSERF NEIFGLQEPV SRERVLATYH PLDEGVSEQA HAIAKQTGRL FYETRLLLTG GALKWIRVQG NVHYSSEGVL KKLLGTVIDI TEFKRLQQQK DDFISIASHE LKTPITSLKA SLQLLERMKA NPTPMLSRLI EQSNRSMEKV SVLVDDLLNV TRINEGQMAL VKKKFSFNKM IDECCSQVRQ LGTHELVVQG VKELQIVADE NRIEQVISNF VTNAVKYATA SREIFLKIED LDQQVKISVR DTGPGIPANK LPHLFDRYFR ADQTGAQVSG LGLGLYICAD IIKRHGGEIG VDSIEGVGST FWFTIPIGG
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