Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1778 |
Symbol | |
ID | 8252881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2075531 |
End bp | 2076508 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644935429 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003092049 |
Protein GI | 255531677 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.545321 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0235367 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATA TATCCATACT TATCCCAACA GGGGGCGTAT TGGGCGGTAT TGAAATCGCC CGCAATATGA TTGCAGAGGC CAATAATTAT GTCATCAGTA AGGGGAACGA GGCCGTGTTT CAAATGCAGC TTGTAGGAGC AAAGAAAAAT ATTGAACTGA ACGAGCGTCA AGTCTTAATT CGACCGGATG TTACAATAAA TTATTTAAAA CAAACCGATC TTATAATTAT TCCAGCGATC AATGTCGATT TGGAACTCAA CAATAATCCA AATGTGCCGC TTATCAACTG GGTAAGGCAG ATGCGTAAAC AAGGTGCTGA GGTGGCATGT CTCTGTGTTG GTGCCTTTTT GCTAGCTAAG ACCGGGATTT TAGACGGTAA AACCTGTACA ACGCACTGGA AAGCTTCAGA GCTTTTCATC AATCAATACC CCGAGATAAA GCTTTTAAAG GAAAAAATCA TTACGGATGA AGATGGAATA TACTCTAGCG CCGGTGGATT TTCTATGCTA AACCTCATAG TATATCTGAT TGAAAAATAC GCCGGCAGGG AAGTTGCCTT GTATTGTGCT AAGTTTTTCC AGGTAGATAT CGACAGGAAT GCACAGTTGC CATTTATAAT TTTTCAGGGA CAAAAAGAAC ACAACGATAT TCAGGTTAAA CAGGCCCAAA CATACATCGA GGAACACTAC CAACAGCGCA TTACAATAGA TCAGTTAGCA GAGATGCTGG CAATGGGTCG CCGTAGTCTA GAAAGAAGGT TTAAAAAGGC AACTTCCAAT ACGCTGAACG AATACATACA ACGAGTAAAA ATTGAGGCAG CAAAAAAACA ATTGGAAAGT GGTGAAAAGA AGATTAATGA CATCATGCTG GAAGTGGGGT ATTCCGATCA GAATAGTTTC AGGCACTCCT TCAAATTATT TACCGGGTTA CTGCCGAATG AATACCGAAG CAAATACCAT AGCAGAATTA CTAATTAA
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Protein sequence | MKHISILIPT GGVLGGIEIA RNMIAEANNY VISKGNEAVF QMQLVGAKKN IELNERQVLI RPDVTINYLK QTDLIIIPAI NVDLELNNNP NVPLINWVRQ MRKQGAEVAC LCVGAFLLAK TGILDGKTCT THWKASELFI NQYPEIKLLK EKIITDEDGI YSSAGGFSML NLIVYLIEKY AGREVALYCA KFFQVDIDRN AQLPFIIFQG QKEHNDIQVK QAQTYIEEHY QQRITIDQLA EMLAMGRRSL ERRFKKATSN TLNEYIQRVK IEAAKKQLES GEKKINDIML EVGYSDQNSF RHSFKLFTGL LPNEYRSKYH SRITN
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