| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1629 |
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| Symbol | |
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| ID | 8252731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1928972 |
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| End bp | 1931101 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644935283 |
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| Product | ribonuclease R |
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| Protein accession | YP_003091904 |
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| Protein GI | 255531532 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.290975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAA AGAAATCAGC CCACCTGGAA CTCGTTTTAA TACAATTGAT TAGCGATGTT
CTGGAGAAAA GCAATAAAGA AGCCCTGAAT TACAAACAGG TTTCGGCTAA ATTGAACCTT
ACCGATGCCG ATTCAAGGGA AACCATATCG GAAATATTAA AAGAACAGGC CAGGAAAGGT
GTATTTTCAG AGCCTGAAAA AGGAAAATTC AGATTGAAGG ACCTGAAGAC CTTTATTACC
GGAAAGGTAG ACATGACGGC AGACGGCGCA GCATTCATTA TCCCCGATGA TGAATTTGAA
AAAGATGTGT TCGTATCGGC CAGAAAGCTC CACAATGCAC TGCATGGTGA TAAGGTGAAG
GTTTACATCT ATGCTAAAAA AAGCGGACGT AAAAACGAAG GTGAAGTTGT AGAGATCATA
GAACGGTCGA AAACAGATTT TATTGGTGTC ATCAGGATCT CAGAACGTTA TGCCTTTGTA
AATGTAGACG ACCGCAAAAT GCTGCACGAT ATTTTTGTGC CCCTGAACGA TCTTAACGGT
GCAAAAAACG GACAAAAGGT TCAGGTAAGC ATTACCGAAT GGCCTGAAGG TGTAAAAAAC
CCGATCGGAA AGATCATCAA TATACTGGGC GAACAGGGCG AGAACAACAC GGAAATGAAC
GCCATTCTTG CACAGTACGG TTTTCCATTG AGCTTCCCGG CCGAAGTAGA GCTGGAGGCC
AATGCCATAC CCGAACAGGT AAGCGCAGCA GAAATAAAAG GGCGGAAGGA TTTTAGAAAT
ACCACTACCT TTACGATTGA TCCTGCTGAT GCAAAAGACT TTGACGATGC CATTTCTTTT
AAAACATTGG AAAACGGCAA TTATGAAATA GGTGTGCACA TTGCCGATGT TTCCCATTAT
GTGAAGCCCA ACAGCAGCCT GGATAAAGAA GCTTATGCCA GGGCCACTTC GGTATACCTG
GTAGACCGCG TAATTCCCAT GCTGCCGGAA CGCCTGAGCA ATGGCGTTTG CTCCTTAAGG
CCCAATGAAG ATAAACTGTG CTTTGCAGCG GTATTTGAAC TGGATGAAAA GGCAAACCTG
GTTAACGAAT GGTTTGGACG TACAGTGATC CATTCCGACC GCCGCTTTAG TTATGAGGAA
GCACAGGAAG TGATTGAAAA CAAAGCCGGC GATTATGCCG CTGAAATTCT GAAGCTGAAT
GAGCTTGCCT ATATTTTAAG GGATAAAAAG TTTAAGAACG GCGCCATCAG TTTTGAAAGC
ACCGAAGTGA AATTTAAACT GGACGAAACC GGTAAACCTA TTGGTGTTTA TGTAAAGGAA
CGCAAGGATG CCCATAAACT GATAGAAGAT TTCATGCTGC TGGCCAATAA AAAGGTAGCT
GAATTTATTG CTAAAAAAGG CAAAGGAAAG CAGAAATATA CTTTTGTTTA CCGCTCACAT
GATTCACCTA ACCTGGAAAA CCTGGGCAAC TTTGCCTTGT TTGCCGCACG TTTTGGTTAT
AAGATCAACA TGAAATCGGA CAAGGAAATC GCAAAGTCTT TAAATTACCT GATGGAAGAT
GTAGAAGGCA AGAAAGAACA GAATGTACTT ACCCAGCTGG CCATCCGCTC TATGGCCAAG
GCCATTTACA CCACCAAAAA AACAAGCCAT TACGGACTGG CATTTGACCA TTATACCCAC
TTCACTTCAC CCATCCGCCG CTACCCTGAT GTGATGGTAC ACCGCCTGCT TGCAGCATAC
CTAAACAATG AAAAGTCGGC CAATGAAGAA GAATATGAAA TTGCGGCCTC CCATTCTTCA
GCGATGGAGA AGCGGGCTGC AGATGCAGAA CGGGCCTCTA TCAAATACAA ACAGGCCGAA
TACCTGGAAG AAAACGTAGG TAACATTTTT GCAGGTATCA TTTCCGGTGT AACGGAATGG
GGAATGTATG TAGAGCTAAC TGAAAATAAA TGCGAAGGGA TGATACGCCT GAGAGACATT
ACAGATGATT TCTATGTGCT TGACGAGAAA AACTATTGCA TAGTTGGCCA GCGCAAACAG
AAAAAATATC AGCTTGGCGA TGAAGTACAG GTGAAAGTAA AAAAAGTAGA CCTGGCCAAA
CGTCAGATCG ACTTCACCTT AATTCAATAA
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| Protein sequence | MAKKKSAHLE LVLIQLISDV LEKSNKEALN YKQVSAKLNL TDADSRETIS EILKEQARKG
VFSEPEKGKF RLKDLKTFIT GKVDMTADGA AFIIPDDEFE KDVFVSARKL HNALHGDKVK
VYIYAKKSGR KNEGEVVEII ERSKTDFIGV IRISERYAFV NVDDRKMLHD IFVPLNDLNG
AKNGQKVQVS ITEWPEGVKN PIGKIINILG EQGENNTEMN AILAQYGFPL SFPAEVELEA
NAIPEQVSAA EIKGRKDFRN TTTFTIDPAD AKDFDDAISF KTLENGNYEI GVHIADVSHY
VKPNSSLDKE AYARATSVYL VDRVIPMLPE RLSNGVCSLR PNEDKLCFAA VFELDEKANL
VNEWFGRTVI HSDRRFSYEE AQEVIENKAG DYAAEILKLN ELAYILRDKK FKNGAISFES
TEVKFKLDET GKPIGVYVKE RKDAHKLIED FMLLANKKVA EFIAKKGKGK QKYTFVYRSH
DSPNLENLGN FALFAARFGY KINMKSDKEI AKSLNYLMED VEGKKEQNVL TQLAIRSMAK
AIYTTKKTSH YGLAFDHYTH FTSPIRRYPD VMVHRLLAAY LNNEKSANEE EYEIAASHSS
AMEKRAADAE RASIKYKQAE YLEENVGNIF AGIISGVTEW GMYVELTENK CEGMIRLRDI
TDDFYVLDEK NYCIVGQRKQ KKYQLGDEVQ VKVKKVDLAK RQIDFTLIQ
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