Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1619 |
Symbol | |
ID | 8252721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1921250 |
End bp | 1922110 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644935273 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003091894 |
Protein GI | 255531522 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0667714 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAGT ATAACAGGAT CCTGATCAAT AAGAATGAGA TCATAAGTGA AGTTACTTGT GATGCCTATT ATCCGATGCT TACGGGAAAG TATGCTTTTA ATGTAGTATT TAATGGCGAA GCAAACTATA CCATCGAGAA GCGGCAGATC ACCCTTGTGC CCGGAAGTTT TATTTTCCTG AACCACGATA CCTGTTATTC CCATAAAATA GATTCATCAG TAGAGGTAAA CACACTTTCT GTGCTGTTTG ATCCTGGTTT TGTGCAGGAT TTTGAATATT CCTATCGGGC TGAAGCAAAA AAACTGCTGG ACAATCCTGC CGACCTGAAA AGTGGGCAGC CGCGTTTTAT GGAATCAATT TATACGCTCC AGGGCGATGT TAAATTTAAT TTACAGCACC TTACCCGACA TTTGGAAAGC GGTACCAATG ACCAGCTGCT TTTAAACGAG TATTTACACC ATTGCCTGAT CAATTATTAT AACCTGTACC ATTCAGAAAT AGAGCGCAGG GAAGCTGCCC TGAAATTTTT GAGCCGTACC ACCAAAACGG AGATCATAAG AAGGTTGTCA ATTGCTAAAG ATTATATGAT CAGCAATTAC AACAAGAGCA TACGCCTTGA CGACATTGCA CAGATGGCCT GTTTATCGGT TAATCACTTG CTGCGTACTT TTAAGCAGGC CTATCAGCAA TCGCCCCACC AGTTTCTTAC CAAGATCAGG CTCCAGCAGG CAAAGCACCT GTTAAAGCAT ACCGACTATC CGGTAAACGA AATTGTAGAT ATAGTAGGCT TTGAATGTCC AAGCTCATTT ATCAGGCTGT TCAGAAACGC TTTCAATGTT ACGCCAGGTC AGTACAGGTA A
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Protein sequence | MMKYNRILIN KNEIISEVTC DAYYPMLTGK YAFNVVFNGE ANYTIEKRQI TLVPGSFIFL NHDTCYSHKI DSSVEVNTLS VLFDPGFVQD FEYSYRAEAK KLLDNPADLK SGQPRFMESI YTLQGDVKFN LQHLTRHLES GTNDQLLLNE YLHHCLINYY NLYHSEIERR EAALKFLSRT TKTEIIRRLS IAKDYMISNY NKSIRLDDIA QMACLSVNHL LRTFKQAYQQ SPHQFLTKIR LQQAKHLLKH TDYPVNEIVD IVGFECPSSF IRLFRNAFNV TPGQYR
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