| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1559 |
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| Symbol | lysS |
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| ID | 8252661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1843484 |
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| End bp | 1845205 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644935213 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_003091834 |
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| Protein GI | 255531462 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.430093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTACAG GACTATCAGA ATTAGAAGTA TTGCGCCGTA ATTCGCTAAC ACAATTACGT
GAACTGGGTA TCAATCCCTA TCCTGCCGAA GCATTTGAGA TCAATGCCCA TGCAGCAGAT
ATTTTAGCGA ATTACGAACG GGATAAAACT GCTTATAAGA ACATCAGCAT GGCGGGCCGC
ATCATGAGCC GCAGAATTAT GGGAAGTGCT TCTTTTGTGG AATTACAGGA CTCAACCGGA
AGAATACAGG TTTATCTGAA AAGAGATGAC CTGTGTCCGG ATGAAGACAA AACTTTATAC
AATACCGTAT TTAAGAAATT GCTGGACCTT GGTGATTTTA TTGGTATAAA AGGTTATGTT
TTTACCACAC AAACGGGTGA GATCTCTGTT CATGTAACAG CACTTACTTT GCTTTCCAAG
TCTTTAAAAC CATTGCCTAT TGTTAAACGT GACGAGGAAG GAAATATTTA TGATGGTTTT
ACTGATCCTG AAATGCGTTA CAGGCAGCGT TATGTAGACC TTACGGTAAA TCCGGGCTTT
AAACAGATTT TTATCAACCG TTCCAAGGTG ATCAATACCA TGCGTGGATA TTTTGATAAT
CAGGGCTGGA TGGAAGTGGA AACACCTATT CTGCAACCCA TTCATGGTGG TGCTGCAGCC
CGTCCATTTG CTACACACCA CAATACGCTG GATATGCCAT TGTACCTGCG TATTGCCAAT
GAACTTTACC TGAAAAGACT GATTGTAGCA GGTTTTGACG GCGTTTATGA GTTTGGTAAA
ATGTTCAGAA ACGAAGGGAT GGACCGTACC CATAATCCTG AATTTACCTC TATGGAGATT
TATGTAGCTT ATAAAGACTA CATCTGGATG ATGGCCATGG TAGAAGAATG CCTGGAGAAA
GTAGCTCTGG CGATCCATGG AAAACCTGTA GTAAAAGTTG GGGATTATGA GATCAACTTT
GAAGGCCCAT ACGAAAAACT GACCATGTAC GAGTCTATCC AGAAATATAC AGGTATAGAT
GTTTCAGTTA TGACAGAAGA AGAGATCAAA ACGGTTTGCA AAAGCCTGGG CATAGAAATT
GATAATTCTA TGGGCAGGGG CAAGCTGATT GATGAACTGT TCAGCGAAAA AGTAGAGGCG
AACCTGATCC AGCCGACTTA CATTACCGAT TATCCGTTGG AAATGACACC TCTGGCTAAA
AAACACAGAA GCAAGGAAGG ACTGGTAGAA CGTTTTGAAT TATTTGTGAT GGGTAAAGAA
ATTGCCAATG CTTACTCTGA GCTGAATGAC CCTATTGATC AGCGGGAACG CTTTGAAGAC
CAGTTAAAAC TTGCTGCAAG AGGTGATGAT GAGGCGATGG CGATGGACGA TGATTTTATC
CGTGCCCTGG AATATGGCAT GCCACCTACA TCGGGTCTGG GTATTGGTAT AGATCGTCTG
GTAATGCTGA TGACCGATCA ATCGACCATA CAGGAAGTAT TGTTTTTTCC GCAGATGAGG
CCGGAAAAGA AAGTCAAAAT AACAACTGAT GAGGATTTTG TAAATGCCGG TGTACCTGCT
GAATGGGTAC AGGCAGTCCG CAAAATGGGC ATCAACACCA TAGAGGAATT AAAAGCAGCA
AATCCAAATA AGGTTTTTAA CGATCTGGGG GGTATGCGTA AAAAACTTAA ATTGGAGCTG
GCCATGCCTT CAAAAGAAGA GGTTACAGCC TGGTTTGCTT AA
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| Protein sequence | MSTGLSELEV LRRNSLTQLR ELGINPYPAE AFEINAHAAD ILANYERDKT AYKNISMAGR
IMSRRIMGSA SFVELQDSTG RIQVYLKRDD LCPDEDKTLY NTVFKKLLDL GDFIGIKGYV
FTTQTGEISV HVTALTLLSK SLKPLPIVKR DEEGNIYDGF TDPEMRYRQR YVDLTVNPGF
KQIFINRSKV INTMRGYFDN QGWMEVETPI LQPIHGGAAA RPFATHHNTL DMPLYLRIAN
ELYLKRLIVA GFDGVYEFGK MFRNEGMDRT HNPEFTSMEI YVAYKDYIWM MAMVEECLEK
VALAIHGKPV VKVGDYEINF EGPYEKLTMY ESIQKYTGID VSVMTEEEIK TVCKSLGIEI
DNSMGRGKLI DELFSEKVEA NLIQPTYITD YPLEMTPLAK KHRSKEGLVE RFELFVMGKE
IANAYSELND PIDQRERFED QLKLAARGDD EAMAMDDDFI RALEYGMPPT SGLGIGIDRL
VMLMTDQSTI QEVLFFPQMR PEKKVKITTD EDFVNAGVPA EWVQAVRKMG INTIEELKAA
NPNKVFNDLG GMRKKLKLEL AMPSKEEVTA WFA
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