Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1248 |
Symbol | |
ID | 8252346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1470269 |
End bp | 1473403 |
Gene Length | 3135 bp |
Protein Length | 1044 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644934901 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_003091526 |
Protein GI | 255531154 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00194744 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAAGA AATTTATAGA CAACCCGGTA TTATCTACAG TAATATCGGT GATCATTGTC ATACTAGGCT TATTGGGCCT GTTTTCCCTG CCCATATCCC AATATCCGGA TATTGCACCG CCCGCTGTTG AGGTCAGTAC AGCTTATCAG GGCGCAAGTG CGGATGTGGT GATGAAAAGT GTGATTATCC CTCTGGAAGA GCAGATTAAC GGGGTGGAAA ACATGACTTA CATGACCTCT AAGGCCAGCA ATGATGGCAG TGCAAGCATT ACGATTAATT TTAAGCAGGG TACCGATCCA GATATGGCCG CTATTAACGT ACAGAACAGG ATTACCAAGG CAACCAGTTT ATTACCTGCA GAGGTGGTAA AAATGGGTAT TACGACCAGC AAAAGGCTGA ACAGCGAGGT GTTTAGTTTT CTGCTGTATA GTGAAGATGG AAAATATGAC CAGAAGTTTC TGGACAATTA CCTGAAGATT AACATTATCC CTCAGATCAA AAGGATCCAG GGTATTGGAG ATGCACAGGT TTATGGGGGT AAAGATTACA GCATGCGAAT ATGGCTGAAA CCGGATGCCA TGGCAGCTTA TGGTCTTATT CCGGCTGATA TTGTGAATGC CCTGGCAGAG CAGAATATTG AAGCCGCACC AGGTAAGGTG GGTGAAAACA GCAACCAGAG CTTTCAGTAT ACCCTAAAGT ACACCGGCCG CTTTGAAAAA GCGGAAGAAT TTGAACACAT CATCCTGAAA TCGGTAGGTA ACGGGCAGGT GTTAAAACTG AAAGATGTAG CAGACATCAA CCTGGGTTCA TTTACCTATT CCAGCACACT GACGGCACAG GGGCAAGAGT CACCTTATGT TGCTGTGAGC CAGACTTCAG GTTCGAATGC GCATGATATT ATCAGGCAAT GTGAAAAGAT ATTAAAGGAT GCAGAGAAAA GTTTTCCAAA AGGGGTGAAG ATAGGGGTAT TTGCAAATGC CAATGAATTT CTGGATGCTT CCATTTCCAA ACTGATCTTT ACCATTATAG AAGCCTTTAT CCTGGTATTT ATTGTGGTAT TTATTTTTCT TCAGGATTTC CGTTCTACGC TGATACCGGC CATTGCAGTT CCGGTAGCTA TTATTGGTAC TTTCTTTTTC CTGAAGTTAT TTGGGTTTAC CATAAACCTG CTTACTCTAT TTGCGCTGGT ACTGGCCATT GGTATTGTGG TAGATGATGC CATTGTAGTG GTAGAAGCGG TGCATGCCAA GCTGGACCAT GGGGCTAAGT CGGCCAAAAA AGCGACCCTG CATGCGATGA GCGAGATCAG TTCGGCCATC ATTTCCATTA CCCTGATCAT GGCTGCGGTA TTTGTTCCCG TAACCTTTGT GACAGGATCG GTAGGTGTAT TTTACAAGCA ATTTGGTTTA ACACTGGCGG TAGCCATTAT CATATCGGCA GTAAATGCGC TTACCCTGAG CCCTGCTCTT TGTGCTTTGT TGCTTAAGCC ACATCAGGGA CATGACCAGG TTAAAAAAGG CTTTATGCAG CGGTTTTATG ACGGCTTTAA CGCCTCATTT TCAGCCATGA CCAACCGCTA TAAAAAATCT GTGGTGTTCC TGGTGAACAG GAAGTGGATT GCTTTTATGG GTATAGCCTT GTTTTCGGTA TTGTTCTGGT TTTTGGTGAA GACTACCCCA ACTGGTTTTG TACCCAATGA GGACAGTGGT TCTATTTATG GTAACGTGAT CCTTCCACCG GCAACATCAC TGGAGCGAAC AGAGGTAATT GCCAACCAGA TTGACAGCAT AGCACGTTCC ATCCCTGAAG TAGAATTGTC GTCGCGGCTG GCGGGTATGG ATTTAATGAG TGGTACGGGA AGTTCTTACG CCGCTATATT TATCCGTCTT AAACCCTGGA AGGAAAGAAC AAAGGAGGGG CAGGACATTA AAAGCATAGT GGGACAGCTG TTTGCCAAAA CTGCCAATAT TAAAGGAGCC AGTATTATAT TTTTTGCAGC GCCAACCTTA CAGGGCTTTG GAAATAACGA TGGGTTTGAA TTTCAGCTGC AGGATAAGAC CGGCGGTAGT TATAAGGCTT TTGATGCTGT AATTGGCAAG TTTATGGGTA CGCTGAACCA GCGGCCAGAA ATCATGTATG CTGCTACATC CTACAATACC AGCTTCCCGC AATATGAAGT AAGTGTAAAC GTAGCGAAAT GTAAGGAAGC CGGTGTTGCG GTGAGTACTG TATTGGGGAC CTTACAGGGG TATCTGGGTG GTATTTATGC TTCTGATTTT AACCGTTTTG GTAAGCAATA CCGTGTCATG ATCCAGGCAG AGGCCGGACA GAGGAGCAAT AAAGAAGCGA TCAGCAAAAT ATTTGTCAGA AATGAGCGCG GTGTAATGGC GCCGATATCA GCGTTTATAA CTTTAAAGAA AACCTATGGT CCGGAATTCA TCAACCGCTT TAACCTGTTT ACGGCTGCTG CGGTAAATGG TGCACCTAAG CCAGGATACA GTTCTGGTGA TGCAATTAAA GCCATACAGG AAGTGGCGGC GCAGACTTTA CCACAGGGCT ATACTTTTGA ATTCTCGGGA CTGACGCTGG AAGAACTATC GAGCGGAAAC CAGACCCTGC TGATCTTTAT ACTGAGTTTG CTGTTCATTT ACTTTTTGCT AAGTGCCCAG TATAAGAGTT ATATTCTGCC CTTTTCGGTT CTGCTTTCGC TGCCTATTGG TTTGGCCGGT GCGTTTTTGT TCGCCCGTTT ATTTGGGCTT GACAATAACA TCTTCCTGCA GATCAGCCTG ATCATGCTGA TCGGATTGCT GGCTAAAAAT GCAATCCTGA TTGTAGAGTT TGCCCTGATG CACAGGTTAA GTGGAAGAAA CCTGGTCCAG TCGGCCATAG CTGGTGCCAC GGCCAGGTTA AGGCCTATTC TGATGACCTC ATTTGCCTTC GTTTTTGGTT TGCTCCCTTT AATGGTTGCA ACAGGTGCGG GGGCCATCAG TAACCGCTCG ATAGGTACTG CAGCTGTTGG CGGGATGCTG ATCGGAACAG TGTTTGGGGT GTTTGTGATC CCTGTGTTAT TTGTGGTTTT CCAGGCCCTG CAGGAAAAGA TCAGTGGTAA CCCAAAAACT GTTGACATTG AATAA
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Protein sequence | MLKKFIDNPV LSTVISVIIV ILGLLGLFSL PISQYPDIAP PAVEVSTAYQ GASADVVMKS VIIPLEEQIN GVENMTYMTS KASNDGSASI TINFKQGTDP DMAAINVQNR ITKATSLLPA EVVKMGITTS KRLNSEVFSF LLYSEDGKYD QKFLDNYLKI NIIPQIKRIQ GIGDAQVYGG KDYSMRIWLK PDAMAAYGLI PADIVNALAE QNIEAAPGKV GENSNQSFQY TLKYTGRFEK AEEFEHIILK SVGNGQVLKL KDVADINLGS FTYSSTLTAQ GQESPYVAVS QTSGSNAHDI IRQCEKILKD AEKSFPKGVK IGVFANANEF LDASISKLIF TIIEAFILVF IVVFIFLQDF RSTLIPAIAV PVAIIGTFFF LKLFGFTINL LTLFALVLAI GIVVDDAIVV VEAVHAKLDH GAKSAKKATL HAMSEISSAI ISITLIMAAV FVPVTFVTGS VGVFYKQFGL TLAVAIIISA VNALTLSPAL CALLLKPHQG HDQVKKGFMQ RFYDGFNASF SAMTNRYKKS VVFLVNRKWI AFMGIALFSV LFWFLVKTTP TGFVPNEDSG SIYGNVILPP ATSLERTEVI ANQIDSIARS IPEVELSSRL AGMDLMSGTG SSYAAIFIRL KPWKERTKEG QDIKSIVGQL FAKTANIKGA SIIFFAAPTL QGFGNNDGFE FQLQDKTGGS YKAFDAVIGK FMGTLNQRPE IMYAATSYNT SFPQYEVSVN VAKCKEAGVA VSTVLGTLQG YLGGIYASDF NRFGKQYRVM IQAEAGQRSN KEAISKIFVR NERGVMAPIS AFITLKKTYG PEFINRFNLF TAAAVNGAPK PGYSSGDAIK AIQEVAAQTL PQGYTFEFSG LTLEELSSGN QTLLIFILSL LFIYFLLSAQ YKSYILPFSV LLSLPIGLAG AFLFARLFGL DNNIFLQISL IMLIGLLAKN AILIVEFALM HRLSGRNLVQ SAIAGATARL RPILMTSFAF VFGLLPLMVA TGAGAISNRS IGTAAVGGML IGTVFGVFVI PVLFVVFQAL QEKISGNPKT VDIE
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