Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1102 |
Symbol | |
ID | 8252196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1288686 |
End bp | 1290119 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644934753 |
Product | type II secretion system protein E |
Protein accession | YP_003091382 |
Protein GI | 255531010 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00726953 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000000000588635 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAAGAGG TTAAACAGGA ACTGAGCGTA AACCCTGCAT TGATCCATGA GCTGACCATG GAACAGGCCT GGTATTACAG GATTTTTCCG GAAGAACTGC TGGCGGATAC CTTATGCCTG TATTGTGAGG AGGGTGCAGA TGTGGCCGCC TTAACAGATG AGCTGGAGGT TTTACTGGGC AGAACCATTG TTTTGCAAAC GCTTGACCCG CTGGTAATGG CCAGGCTGCT GAACCAGTAT TACATCAGGG AAGAGCAGCA GACCAGCATC GGCAACCTGA CGCATGACCA TGCTTCTGAT GATTTCCTGG AAAACCTGAT TGCTGAGGCC AAGCGTTTAA AAAGCAGTGA CATCCATATT GAAACTTACG AAGAAAAATG CAGGGTGCGG ATCCGGATTG ACGGGATGTT GATTGAGCGT TACCTGTTGA GCCGCCTGGA ATACCCGGCC ATCATTAACC GGATCAAGAT TCTGGCTAAC CTGGACATTG CAGAGAAAAG ACTGCCGCAG GATGGCAGGA TCAACTTTAA GACTGCCCAG CACCAGTTTG ACATCAGGGT ATCGGTGCTG CCCACGCTTT ATGGCGAAAA GGTGGTGCTC CGCTTATTGA ACAATGATGC CACCAATATA GACCTGTATA CCCTTGGCTT TGCTGAAGGG GATCTGAACA ATTACCTGGA AGGGGTAAAA AGGCCCAATG GCATTGTACT GATCAGCGGG CCAACAGGCT CTGGTAAAAC CACCACCCTG TATGCTACAT TGAAACTGCT GAACAAGAAC ACCAGGAACA TCCTGACCAT TGAAGATCCC ATTGAATATA CGCTGGACGG CATTAACCAG GTACAGCTGA AAGAGAACAT AGGCCTGACC TTTGCTGCGG CACTCCGCAC TTTTTTAAGG CAGGACCCGG ATGTGATCAT GGTTGGGGAG ATCCGCGATC CGGAAACGGC CAATATGGCC ATACGCGCTG CATTAACGGG TCACCTGGTG CTTTCTACCA TCCATACCAA CTCGGCCTGG GGCACCATAT CGCGTTTGAT GGATATGGGC ATTCCGCCTT TTTTGGTGGC CAATACCTTG AATACCTCGG TAGCGCAGCG CCTGGTGCGC CTGCTTTGTC CGCATTGTAA AACCCAAAGC AGCATGGAAC ACAGCCTGTA CCCTAAAAGT TTTAACCCGC CCGAAAAGGT GGATGTGCAT TGGATGGCAA AGGGCTGCGA CCAGTGCTAT TTTACCGGTT ATAAAGGCCG TAAGGCAGTA TATGAAGTGA TCCCGCTGGA CCAGGAGCTG GCCTTCCAGA TCAAGGCAGG CAACCAGCAG CCTGAGGCCT TATTAAAGGA ACGGGGAATT TATACCATTG GTGAAAATGC TTTTGCGCTG TTTGCCCATG GCCATACCTC ATTAGAAGAA GTTTACCCGC TATTGTATAA TTAA
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Protein sequence | MKEVKQELSV NPALIHELTM EQAWYYRIFP EELLADTLCL YCEEGADVAA LTDELEVLLG RTIVLQTLDP LVMARLLNQY YIREEQQTSI GNLTHDHASD DFLENLIAEA KRLKSSDIHI ETYEEKCRVR IRIDGMLIER YLLSRLEYPA IINRIKILAN LDIAEKRLPQ DGRINFKTAQ HQFDIRVSVL PTLYGEKVVL RLLNNDATNI DLYTLGFAEG DLNNYLEGVK RPNGIVLISG PTGSGKTTTL YATLKLLNKN TRNILTIEDP IEYTLDGINQ VQLKENIGLT FAAALRTFLR QDPDVIMVGE IRDPETANMA IRAALTGHLV LSTIHTNSAW GTISRLMDMG IPPFLVANTL NTSVAQRLVR LLCPHCKTQS SMEHSLYPKS FNPPEKVDVH WMAKGCDQCY FTGYKGRKAV YEVIPLDQEL AFQIKAGNQQ PEALLKERGI YTIGENAFAL FAHGHTSLEE VYPLLYN
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