| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1072 |
|---|
| Symbol | |
|---|
| ID | 8252166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1259301 |
|---|
| End bp | 1260473 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644934723 |
|---|
| Product | AAA ATPase |
|---|
| Protein accession | YP_003091352 |
|---|
| Protein GI | 255530980 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1373] Predicted ATPase (AAA+ superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.352616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA GAAGAGTAGA AAAACAAGTC GAAGAAGCAC TCAAAAGAAG CGCTTCTGTA
GCATTAATGG GACCGCGTCA GGTTGGAAAA ACAACCATTG CAATGAACAT CAGTGACACA
ACAACTGCTG TTTATCTTGA TTTGGAGGAT AGCCTTGATC TTCAAAAAAT CCAGGATGTA
AGTGCGTTCC ACGAAGAAAA TCGTGATCAT CTGATTATCA TGGATGAGGT TCAACGGGTA
CCTGAAATAT TTGCATCACT TCGCGGAATC ATTGACAAAG AGCGTAGGAG AGGACATAAA
TATGGACAGT TTTTATTTCT GGGATCCGCC TCTATGGATT TGCTTCAACA GTCCAGTGAG
TCGCTTGCAG GTAGGATTGC TTATATAGAA CTCCAAGGTG TTGATGCTTT AGAATTTAAG
GCTAACAATG CTGAAAACCA AAACCAGCTT TGGTTAAGAG GGGGATTTCC TGAAAGCCTG
CTCGCTGATA GTGATAAGAA TAGTATGGCA TGGAGGCGTG ATTTTATCAG AACCTACCTT
GAACGAGATA TTCCACTTTT AGGACCCCGC ATTCCAGCTG TCACACTGGA AAGATTCTGG
ACGATGCTTG CGCATGTTCA GGGAGGAATG ACCAATGCTT CACAAATTTC TAAAAGTCTG
GAAGTCACTT CAACAACAGT GAGCAGATAT CTGGATCTGA TGGTTGATTT ATTATTAGTA
CGCCGCTTAC AACCCTGGAC TCAAAATGTT GGAAAACGTC TGGTAAAAAC TCCAAAAGTA
TATGTAAGAG ATAGTGGAAT TACGCATGCC TTGCTTAATT TGGAAAGCTA TAATGATCTG
CTTGGCCACC CAGTAGCAGG AGGAAGCTGG GAAGGATTTG TGATTGAAAA TATCTTATCG
GTTGCGCCCA ATAATGTTAT TCCATATTAT TACAGAACTT CTAATGGGGC GGAAATAGAC
TTAGTTTTGG AGTTCTCCGG TAATGAGAAA TGGGCTATAG AAATTAAGCG GAACTCTGCA
CCAACACTGT CTAAAGGATT TCATATAGCC TGTCAGGACA TCAACCCAAG TAAGAGGTTT
GTTGTTTATT CAGGCCAGGA TAGATTCCCA ATGGCAGAAA ATATAACTGC GATCTCTCTT
TGCGGCATAA TGGAAGAATT GCTGACCAAG TAG
|
|---|
| Protein sequence | MILRRVEKQV EEALKRSASV ALMGPRQVGK TTIAMNISDT TTAVYLDLED SLDLQKIQDV
SAFHEENRDH LIIMDEVQRV PEIFASLRGI IDKERRRGHK YGQFLFLGSA SMDLLQQSSE
SLAGRIAYIE LQGVDALEFK ANNAENQNQL WLRGGFPESL LADSDKNSMA WRRDFIRTYL
ERDIPLLGPR IPAVTLERFW TMLAHVQGGM TNASQISKSL EVTSTTVSRY LDLMVDLLLV
RRLQPWTQNV GKRLVKTPKV YVRDSGITHA LLNLESYNDL LGHPVAGGSW EGFVIENILS
VAPNNVIPYY YRTSNGAEID LVLEFSGNEK WAIEIKRNSA PTLSKGFHIA CQDINPSKRF
VVYSGQDRFP MAENITAISL CGIMEELLTK
|
|---|
| |