Gene Phep_1071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1071 
Symbol 
ID8252165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1258702 
End bp1259268 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content41% 
IMG OID644934722 
ProductRNA polymerase sigma factor, sigma-70 family 
Protein accessionYP_003091351 
Protein GI255530979 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.553697 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCTT ATAGTACTTA TACAGATCAG GAGCTACTCG CTAAATTGCG TGGTGGAGAC 
AAGTTTGCAT TTGATGAAAT TTACACAAAG CACTGGAGCA AGGTGTATAA CCAGAGTTTC
AAAAAATTAC ATGACCCGGA ACTGGCCAAG GATATTACAC AGGAAGTATT TATCTATTTA
TGGCAACACC GGGAAAACAA TCTTATTGAA AACCTACCGG CCTATCTTTT TACTTCGGTA
CGGAACAATG TGTTCAGGGC ATTGAAAAAA CAAGACCGTT TTATTCCTGT TACGGATTTG
ATTATAGAGG CCCGGGCATT TTACCCGGAT GCAGATGCGG ATTTGCTTGC GAAAGAATTT
TTTAAAACCT ACGATATATT GGTTAATGCA ATGCCGCCTG CACAGCAGCG GATTTTCAGG
ATGCATTATC ATGACGATCT TTCGACCCAG GAGATTGCAA AAATACTAAA GCTTTCGAGA
GGAACGGTAC AAAATCAACT TACCAGGGCA GTAACGTTGT TGAGGGCTTC GTTGTTGAGT
ATTGCTTTGA TGATAAGCCA GCAGTAG
 
Protein sequence
MSAYSTYTDQ ELLAKLRGGD KFAFDEIYTK HWSKVYNQSF KKLHDPELAK DITQEVFIYL 
WQHRENNLIE NLPAYLFTSV RNNVFRALKK QDRFIPVTDL IIEARAFYPD ADADLLAKEF
FKTYDILVNA MPPAQQRIFR MHYHDDLSTQ EIAKILKLSR GTVQNQLTRA VTLLRASLLS
IALMISQQ