Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1071 |
Symbol | |
ID | 8252165 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1258702 |
End bp | 1259268 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644934722 |
Product | RNA polymerase sigma factor, sigma-70 family |
Protein accession | YP_003091351 |
Protein GI | 255530979 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.553697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCTT ATAGTACTTA TACAGATCAG GAGCTACTCG CTAAATTGCG TGGTGGAGAC AAGTTTGCAT TTGATGAAAT TTACACAAAG CACTGGAGCA AGGTGTATAA CCAGAGTTTC AAAAAATTAC ATGACCCGGA ACTGGCCAAG GATATTACAC AGGAAGTATT TATCTATTTA TGGCAACACC GGGAAAACAA TCTTATTGAA AACCTACCGG CCTATCTTTT TACTTCGGTA CGGAACAATG TGTTCAGGGC ATTGAAAAAA CAAGACCGTT TTATTCCTGT TACGGATTTG ATTATAGAGG CCCGGGCATT TTACCCGGAT GCAGATGCGG ATTTGCTTGC GAAAGAATTT TTTAAAACCT ACGATATATT GGTTAATGCA ATGCCGCCTG CACAGCAGCG GATTTTCAGG ATGCATTATC ATGACGATCT TTCGACCCAG GAGATTGCAA AAATACTAAA GCTTTCGAGA GGAACGGTAC AAAATCAACT TACCAGGGCA GTAACGTTGT TGAGGGCTTC GTTGTTGAGT ATTGCTTTGA TGATAAGCCA GCAGTAG
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Protein sequence | MSAYSTYTDQ ELLAKLRGGD KFAFDEIYTK HWSKVYNQSF KKLHDPELAK DITQEVFIYL WQHRENNLIE NLPAYLFTSV RNNVFRALKK QDRFIPVTDL IIEARAFYPD ADADLLAKEF FKTYDILVNA MPPAQQRIFR MHYHDDLSTQ EIAKILKLSR GTVQNQLTRA VTLLRASLLS IALMISQQ
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