| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1050 |
|---|
| Symbol | |
|---|
| ID | 8252144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1236235 |
|---|
| End bp | 1239708 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644934703 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_003091332 |
|---|
| Protein GI | 255530960 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGTA TCATGAAATT ATATCAGAAT TTAACGCCCC AAAGGGCATG GAAATATATC
GCTGTTTGCT TAGTGGCAGG TTTTACCAGT TCAAATGCCC AGCACCTTAC GCTGAACACT
TACAGCAACC AGACTGAAAT TAAAGCTACC GGGAGTATAA CGCTGACGGA TGGATTTTAC
ATCCCTGCGG GCAAGAATGT AAGGATCTTT ACCGGGGCGA GTTTCCAGCA ATGTGTGGAC
CTGGTAAGTA CCCCAAGTGC AGATCAGAAT TACATCAGTA CCAAGGTATT TAAAAAAGAA
GGGGTAAATG AAGGGAACAT CAATGCCACA CTGAGTACCT GCGAGGTAAA CCAGACCGTA
CAGTATTTTG ATGGATTGGG CAGGCCTTTG CAAACGGTGA CGGTACAGGG CAGTCCCGGC
TTTAAGGATG TGGTGCAGCC TGTTGACTAT GATGCCTTTG GCCGGGAGCA GTTCAAATAC
CTGCCTTACT CTACTGTTAC AGGTGCCAAT GGCAGCTTTA AGCCTTCTGC AATAACCAGT
CAGGCAGGTT TTTACAACAG CCCCCCGGCA GGTGTGGCCA CGATTACAAA CACGGCCTTT
TCAGAGAGCA GGTTTGAACC TTCACCTTTG AACCGGGTAC TGGAACAGGG ATCCCCCGGT
GCCAGCTGGC AGCTTAGTGC CGGTCATACC CAGAAAATGG AGTACGGCTC CAACAACAGT
ACAGACTATG CAGTACGGTT GTATCAGGCT GTACCCTCTG CAACCCCCGG AGAAGAACAC
AAACGGATAC TCAGCGGAAC AGGTTATTAC ACTGCCAATG AACTGTACCT GAGCATCAGC
AAGGACGAGA ACTGGGCAAG TACCGATGGC AAAGCCGGTA CCACAGAAGA ATATAAGGAC
AAAGAGGACA GGGTAGTGCT GAAGCGTGTA TTTAATTATA AAAATGATGT GACTGAAACC
CTAAGCACCT ATTATGTGTA TGATGACCTG GGGAACTTAA GTTTTGTGCT GCCACCAGGT
GCAAACCCGG ATGCCCTGGC CCTGCCTTCC CAGACACTGC AGGACCAGTT CTGTTACCAG
TACCGTTACG ATGGGCGTAA AAGGCTGATT GAAAAGAAGC TTCCGGGCAA GGACTGGGAA
TACATGGTGT ACAACAAACT GGACCAGCTG GTGCTGAGCC AGGACTCCTT GCAAAGGGTA
GCTAACCAGT GGCTGTTTAC CAAATACGAT GCTTTGGGCA GGGTAGCAAT TACCGGTGTA
TACGGAGATG GGGCTTCCAG GAGCAGCCTG GCCGGTACAT TGAACAGCCA GAGCGTACTT
TGGGAAAACA GGCTGGGTAG CGGGACCGAT TATGACAACG GTTCATTCCC TCAGAACAAC
ATTGCCTGGT ACCATACGAT CAATTACTAC GACGATTACA ATTTTCCGGG CAATAGCTTT
CCCCAGCCTG ACGGGGTTAC CCAGATGTCG GCCTCCAGGG TAAAAGGACT GCAGACGGGC
AGTTTTGTTT ACCAGGTGAA CAGCAGTACC CGTTACCTGA GCGTGAACTA TTATGACAAA
GATGGCCGGG TGCTCAAAAC AGCAGCAGAG AACCATTTGG GCGGTACAGA CCTTACGGAG
AATACCTGGA ACTTTGCCGG TGAGCTGACG GGCAGTACCC GTACCCATAG TAGTGGCTCG
GGCCCAGCCA CTACTATTGC CACCCGGCAT GAATACGACC ATATGGGAAG GAAGAAGGCG
ACCATGGAAT CCATTAACGG TCAGCCTGAA GTGGTGCTGA GCAAGCTGGA CTACAATGAA
CTGGGGCAGC TGAGCAAAAA ATGGCTGCAC AGTACGGATA ATGGAACAAG CTTTTTGCAA
CATACGGATT ATGCCTATAA CGAACGGGGC TGGCTGAGCA ACAGTAGATC AGACCAGTTC
AGTATAAGGT TGAAGTACGA CGATGGCACC GTACCGCAGT ACAATGGCAA TATCGCTAAC
CAGAACTGGG GAGCAGCGAC GACCTACCCC AATACTTTTA CCTATGGATA CGATAAGCTG
AACCGCTTAC TGAGCGGGGT AAGTACCGGG GCGATATCGA TGAGTGAAGT GCTGAGTTAT
GATGTGATGG GCAACATCAG TACCCTGAAC AGGGATGGAG CAGGAGCGGG CAGCTATATT
TACGAAGGCA ACAGGCTGAA GAGCATCTCA GGTGGCGGGC TGGCTGCCGG GAGTTATGCC
TATGACGGGA ATGGGAATGC GGTTACCGAT GGGCGTACCG GTGTAAACTT AACCTATAAC
CACCTGAACT TACCCATCAC TGTTAATGGA TCGGGACTGA ACATTGCCTA TACCTATGAT
GCAATGGGCA GGAAACTGAA AAAGGTGAGT AACATGGAGG CCCCTTCAGA TTATGTGGAT
GGGGTACAAT ACACCGGAGG GGCAATAGAG TTCATCATGA CCGAGGAGGG TAAAGCGAGG
AGCAATGGTG GTACCTACAG CTATGAGTAT AACCTGACAG ACCATTTGGG TAATGTGCGG
TATACGTTCT ATCAACACCC ATCCAGTGGT TTGCTGGAAC GTTTACAAAG TGACGATTAT
TATGCTTTTG GTTTAAGAAA ATCAGGAGTT CCAATTTCTG GAAATAATAA ATATCTTTAC
AATGGCAAGG AGTTGCAAAG TGAGCTGGGA CAGCTCGATT ATGGTGCAAG GTTCTATGAC
CCGGAGATTG GAAGGTGGAA CGTGATTGAT CCGTTAGCTG AGAAGGGAAG AAGATGGTCA
CCATATACCT ATGCATTTAA TAACCCAATG AGATTTACGG ATCCCGATGG TATGTGGCCA
GACGATGGCT ATGGCCCGGG AGATGACGAA TTGATTGGTG TTCAAACCGG AATGGCCATA
GGGGGTGCGA TTAGAGATGG TATACATGGA CTCAGAACAC TTGTAGCAGC TGCTGGTGAC
GCTTTAGGTA TAAACAAGGC TGCCCCCGGA ATGAAATGGC AATCTGTAGA CAGTGAAGGT
GGCACATTAG GGTACAGTAT GGCTCAGGTT CCTAGTGAAG GTGGTTTAAA AGATGCCCTA
GGTCATCTGG GTGATGGTGC AAATGCTTTA GCTTTCAATG GTTCTCTGGC TAAAGGTACA
ACGGGTACAT TATTGGCTAA AACAGGTCAG GAAGGTCGAG CGGCAAGTGA AGGTGTGAAA
ATTATTAAGG ATGGAGATGC TGCAAGTAAT ATGCTTAATC CTTTTGATTT AACGCCTACA
CATGGTACAA CAGGATCAAA CTTAAAAAAA GTGGAAGCGT TAATTAAAAA AGATGGCGGG
ATAACTGACC CAGTAAAATA CATAGAACAT AAAGGCAACA AATATATAGT TGATGGTCAC
CATCGTGTGC AGGCAGCTAA AAAGTTAGGG TTTTCACAAG TGCCGGTGCA AGCAGAGCAA
TTGCCTTACG GAAGCTATAG GACAACGGCA GATTTTCAAT TTACAAAACA CTAA
|
|---|
| Protein sequence | MLRIMKLYQN LTPQRAWKYI AVCLVAGFTS SNAQHLTLNT YSNQTEIKAT GSITLTDGFY
IPAGKNVRIF TGASFQQCVD LVSTPSADQN YISTKVFKKE GVNEGNINAT LSTCEVNQTV
QYFDGLGRPL QTVTVQGSPG FKDVVQPVDY DAFGREQFKY LPYSTVTGAN GSFKPSAITS
QAGFYNSPPA GVATITNTAF SESRFEPSPL NRVLEQGSPG ASWQLSAGHT QKMEYGSNNS
TDYAVRLYQA VPSATPGEEH KRILSGTGYY TANELYLSIS KDENWASTDG KAGTTEEYKD
KEDRVVLKRV FNYKNDVTET LSTYYVYDDL GNLSFVLPPG ANPDALALPS QTLQDQFCYQ
YRYDGRKRLI EKKLPGKDWE YMVYNKLDQL VLSQDSLQRV ANQWLFTKYD ALGRVAITGV
YGDGASRSSL AGTLNSQSVL WENRLGSGTD YDNGSFPQNN IAWYHTINYY DDYNFPGNSF
PQPDGVTQMS ASRVKGLQTG SFVYQVNSST RYLSVNYYDK DGRVLKTAAE NHLGGTDLTE
NTWNFAGELT GSTRTHSSGS GPATTIATRH EYDHMGRKKA TMESINGQPE VVLSKLDYNE
LGQLSKKWLH STDNGTSFLQ HTDYAYNERG WLSNSRSDQF SIRLKYDDGT VPQYNGNIAN
QNWGAATTYP NTFTYGYDKL NRLLSGVSTG AISMSEVLSY DVMGNISTLN RDGAGAGSYI
YEGNRLKSIS GGGLAAGSYA YDGNGNAVTD GRTGVNLTYN HLNLPITVNG SGLNIAYTYD
AMGRKLKKVS NMEAPSDYVD GVQYTGGAIE FIMTEEGKAR SNGGTYSYEY NLTDHLGNVR
YTFYQHPSSG LLERLQSDDY YAFGLRKSGV PISGNNKYLY NGKELQSELG QLDYGARFYD
PEIGRWNVID PLAEKGRRWS PYTYAFNNPM RFTDPDGMWP DDGYGPGDDE LIGVQTGMAI
GGAIRDGIHG LRTLVAAAGD ALGINKAAPG MKWQSVDSEG GTLGYSMAQV PSEGGLKDAL
GHLGDGANAL AFNGSLAKGT TGTLLAKTGQ EGRAASEGVK IIKDGDAASN MLNPFDLTPT
HGTTGSNLKK VEALIKKDGG ITDPVKYIEH KGNKYIVDGH HRVQAAKKLG FSQVPVQAEQ
LPYGSYRTTA DFQFTKH
|
|---|
| |