| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0948 |
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| Symbol | |
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| ID | 8252042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1103157 |
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| End bp | 1103726 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644934603 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003091232 |
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| Protein GI | 255530860 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.799329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.119543 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGGATT TACGTGGCGT TTCTGACCAG GAACTGTTTG CCTTGCTGAA GGAAGGTGAC
CAGTCTGCCT ATACCGAAAT TTTCAGACGT TATGCGCCAT TGATGGTTTC GCACGCCTAT
CGTTTATTGG GTGACCGAGA TGAGGCCAAT GATGTGGTTC AGGATGTCTT TATGGCACTT
TGGCAGCGGC ACAAATCACT AGAGCTGATC ACTTCGCTTT CCTCATACCT GTATACTGCC
ATCCGTAACA GGGTATTCAC CAGAATGTCC CACGAGAAGG TGGTGTCGAG ATATGCCGAT
TCCATTATGG AGCACATGGG CAAGGCGTTT ACGCTATCCG ATGATAGTTT TATGGCCAGG
GAATTGCAGA AACTGATTGA TGAGGAGATT GCCGCACTGC CTGAAAAAAT GAGAGAGGTT
TTTTTGATGT ACCGTAAAGA GGAGCTTTCC TATGGGGAGA TTAGTGAGCG TTTGGGTATT
TCCGATAAAA CGGCGAAGCA GCAGGTCTAT AATGCCACAA AGATCCTTCG TTCCAAGTTG
CAGGTTTTCC TTGCAATTTT TTTAGTGTAA
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| Protein sequence | MMDLRGVSDQ ELFALLKEGD QSAYTEIFRR YAPLMVSHAY RLLGDRDEAN DVVQDVFMAL
WQRHKSLELI TSLSSYLYTA IRNRVFTRMS HEKVVSRYAD SIMEHMGKAF TLSDDSFMAR
ELQKLIDEEI AALPEKMREV FLMYRKEELS YGEISERLGI SDKTAKQQVY NATKILRSKL
QVFLAIFLV
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