| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0902 |
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| Symbol | |
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| ID | 8251996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1056632 |
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| End bp | 1057201 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644934557 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003091186 |
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| Protein GI | 255530814 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000194278 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGTGCTT ACAGTACTTA TACTGATCAG GAACTGACGG CTTTGTTAAA AAGTGGGGAC
AGCCATGCGC TTACTGAAAT TCATAGCAGG TATTATGCGG TATTGTATGC CCATGCTTAC
AAACGGTTTC CATATCGTGA GGAAGTGCTG GATATTTTGC AGGAGCTTTT TACTTATATG
TGGGATCACA GAATGCAATT GGTTTTTACT ACAACATTGC CGGGTTATTT ATATGCTGCT
GTTCGTAATC GTGTGCTTAA TTTGCATAGG AGCCAAAAAG TGCGGGGAGA ATATGCGGTT
TCTTTACAGG AGTTTTCTGA GCAGGGTGAA AGCATTACCG ATAACCTGAT ACGGGAGAAA
GAACTTTTAC AAATGGTAGA ACAGGAGATT GCAAAACTGC CCACCCAAAT GCGGATCATT
TTTGACCTTA GCCGTAACGA GGCCCTTAGC CATAATGAGA TTGCAAAAAA ACTCAATTTA
AGCCCTCAAA CCGTGCGTAC GCAGGTACGT AATGCCTTAC GTATTTTAAG GGTAAAACTT
GGTGCTAACA TATTTTTAAT CTTTTTGTAA
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| Protein sequence | MGAYSTYTDQ ELTALLKSGD SHALTEIHSR YYAVLYAHAY KRFPYREEVL DILQELFTYM
WDHRMQLVFT TTLPGYLYAA VRNRVLNLHR SQKVRGEYAV SLQEFSEQGE SITDNLIREK
ELLQMVEQEI AKLPTQMRII FDLSRNEALS HNEIAKKLNL SPQTVRTQVR NALRILRVKL
GANIFLIFL
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