| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0872 |
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| Symbol | |
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| ID | 8251966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1027179 |
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| End bp | 1027739 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644934527 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003091156 |
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| Protein GI | 255530784 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.028729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00270858 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCAGG TTGAAGATTC AGAGATTTTA GAGAAGTTCT CCAATATAAA AACTCGGGAT
GAAGCCTTTA ACCTGCTTCT AAATAAATAC CAACAAAAGA TTTACTGGCA CATCAGAAGG
CTGGTCATCG ATCATGATGA CGCTGACGAC CTGGTGCAGG ACACCTTTAT AAAGGTTTGG
AAGAACCTTG AAAAATTCCG CAGCGATTCG CAGCTTTATA CCTGGATCTA TAGGATTGCC
ACCAATGAAT CCATCACTTT CCTAAACAAA AAGAAACAAC GAAACAATAC ACCCCTGGAT
GAAGTATCGG CCGAACTTTC AGAAACCCTG ATTGCTTCTT CTCATTTTAA TGGTGATAAA
GTTCAGTTAA AACTTCAGCA GGCCTTACTT ACCCTACCGG AAAAACAACG CCTGATTTTT
AACATGAAGT ATTTTGATGA GCTGAAGTAT GAAGAAATTT CGGAAATAAC AGGGACTAGT
GTAGGTGCCT TAAAAGCATC CTTTCATATC GCTGTAAAGA AAATTGAAGT TTTTATGCTA
AATGAAGACA TTACCTTTTA A
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| Protein sequence | MKQVEDSEIL EKFSNIKTRD EAFNLLLNKY QQKIYWHIRR LVIDHDDADD LVQDTFIKVW
KNLEKFRSDS QLYTWIYRIA TNESITFLNK KKQRNNTPLD EVSAELSETL IASSHFNGDK
VQLKLQQALL TLPEKQRLIF NMKYFDELKY EEISEITGTS VGALKASFHI AVKKIEVFML
NEDITF
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