Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0840 |
Symbol | |
ID | 8251929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 991477 |
End bp | 992361 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644934490 |
Product | integrase family protein |
Protein accession | YP_003091124 |
Protein GI | 255530752 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.774041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTTG AGCATTTTCT GACCTACCTT CAGCACGAGA AGAGATATTC TTCACATACC ATCCAGTCTT ATCAAACAGA TCTGCTACAG TTTACTGATT TTATGCAGCA AACTTTTGAA CTGCCCTTAA CTGAGGTGAA GTATGTGCAT ATAAGAAATT TTATTGTTGC ACTGATGGAA GATGAAATTT CTGAGAATTC TGTGGGCCGG AAGCTATCTG CCCTACGCAG TTTTTATAAG TATCTGTTGC GCGAAAATGT ATTGTCCTCA AATCCAATGG CGCTTGTTAA GGCACCAAAG GTACCTAAGA GATTACCTGT ATTTGTGGAT GAAGGTAAAC TTGACCTGCT GCTGGATTCA GAAGAATTTT TTGATGGTAG CTTTCCTTCA CTGCGCGATA AAACGGTTAT AGAAACTTTA TTTGGTACCG GGATCCGTTT GGCCGAACTG CTCTCGTTAA AGGAAACAGA TATTAATTTT TATGAATCTA CGATCAGAGT GATGGGGAAA AGAAGTAAAG AGAGGATCGT TCCAATAGGT AAAACGCTTA GGGAACAGTT CAGGGTTTAC ATGGAACTTA AAACATTACA AAATTTTGAT AACAAAACGA CCATGTTATT CGTTACTGAT AAAGGAGCTG CTGCTTACCC TAAACTGATA TACAGAACTG TGCAGCGTTA TTTGACTTAT GTTTCGACAC AAGATAAAAA AAGTCCCCAC GTGTTGCGCC ATTCTTATGC CACTAGTTTA TTGAACAGAG GGGCCGATTT GAATGCCATT AAAGAATTAT TGGGACATGC AAGCTTAGCG GCAACGCAGG TTTATACGCA CAATTCAGTA GAAAGATTAA AAACAATATA TAAACAGGCC CATCCAAAGG CGTAA
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Protein sequence | MTVEHFLTYL QHEKRYSSHT IQSYQTDLLQ FTDFMQQTFE LPLTEVKYVH IRNFIVALME DEISENSVGR KLSALRSFYK YLLRENVLSS NPMALVKAPK VPKRLPVFVD EGKLDLLLDS EEFFDGSFPS LRDKTVIETL FGTGIRLAEL LSLKETDINF YESTIRVMGK RSKERIVPIG KTLREQFRVY MELKTLQNFD NKTTMLFVTD KGAAAYPKLI YRTVQRYLTY VSTQDKKSPH VLRHSYATSL LNRGADLNAI KELLGHASLA ATQVYTHNSV ERLKTIYKQA HPKA
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