| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0717 |
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| Symbol | |
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| ID | 8251805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 830045 |
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| End bp | 831724 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644934366 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003091001 |
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| Protein GI | 255530629 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAATC AGGAATCATC AGACCAGCTT TCGCGCCGCG CCTGGCTGGG CAAAGTTTCT
GTTCCGGCCT TAGCACTTGG GGGAGCAGCG ATGATCAGTG CCACAATGCC GCAGGAAATA
CCTAAACAGG ATATTTATAA CATCAGGGAC TACGGAGCAA AAGGGGATGG GGAAAGCCTG
GATACTGTTG CCATACAAGC TGCAATTGAT GCCTGTAATG CGGCAGGGGG TGGCACGGTG
TTCATTCCCA CAGGTGTATT CTTATCCGGA ACCCTGCAGC TTAAATCCAA TGTAACCTTT
CATTTATCAG CCGGGGGTAA ATTACTTGGA AGTCCGAAAA GAGCCCATTA TACCGCAGGC
AAAGGTGTGC CGGCAGGAAA TGGCAACATC GTTTTTCTGT ATGCAGTAAA TGCAGAAAGG
TTAAGCATTG AGGGTAAAGG TACCATAGAC GGGAACGGAC TGGCATTCTA TAACGGAAAA
GGCGACAATA CCGGGCCCGG ACAAAAAGGC ATTGATGGCA ATTTCGACCG TCCGCATCTC
CTCATTTTTT ATCAATGTAC CGAACTCCGT TTACACGATG CCTTTTTACA GGCCAGCGCC
TACCACTGTA TCCGTTTACT GCAATGTAAA CAGGTATATA TAGATGGTGT AAGAATTTAT
AACCGTGTAA ATAAAAATAA CGATGGTTTT CATTTTAGCA GTTGCCAGTA CGTACACATT
ACCAATTGCG ATGTACAATG CCAGGATGAT GCCTGCGCTT TGTTTGGCAG TAATAAATTT
GTAACCATTA CCAATTGCAG TTTTAGTACC CGCTGGTCTA TATTTCGTTT TGGCGGTGGC
GAATCGCAGA ATATTGCAGT ATCCAATTGC CTTATTTACG ATACTTATGG CTGCCCGATA
AAGATCAGTG CAGGGAGGGC CAGTATAGAA AATTTTAGCT TCTCCAATAT CATCATGAAA
AATGTAACCG GGCCCATCGG GATTGGCTTT AGTGGTACAC CCGGCAACAT TCAAGGAGGC
AGCAATCAGG TTGCCGGCAA GCCCTTTATC CGCAACATTT CGTTTAATGG TATAAGGGCC
TCTGTAGTGG CGGCACCTGT CCCTCATCCC GATATCCATT TTGAACTCAA CTTTAAAGAA
GGAGAAAGAA ACTCCTGCAT TACCCTGAAT GCTATGGACG ATCATTACCT CGAAAACATC
AGTTTTACGG ATGTGCATGT AACCTATGCC GGGGGTGGTA CACTAGCTCA GGCCGGTAAA
CACGATGTTC CGAAAATTGC TGCCGAATAT TTTGGTGTCT GGGATACGGC GCCGGGAGGT
CCCCCCGCCT ATGGCTTGTA TGCCAGAAAT GTAAAGGGTT TAACCCTGCA AAATGTACGG
TTCGAATTTG AGCATAATGA CAGTCGGCCC GCTATTGTTT TTGACAATGT ACAGGATGCA
GCTATCAATG GCTTAAGTCT ACAGGGCAGT ACTACTGCGC CATCCCTGTT AAGAATAGTG
AATTCAAAAG ACCTGCTGTT TACCGCCACC AGGGTGTTAA GCCCTTGTAA GGTGCTGCTC
AGTTTAGAAG GAAAATCCAA TGAAGCCATA ACCATTGACG GGGGCGAATT CATAAAGGCA
ATTACAAAAG TAGTTTACAG TGGAGGTGCG AATGAAAAAT CTCTGAAATT AAGAACCTGA
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| Protein sequence | MINQESSDQL SRRAWLGKVS VPALALGGAA MISATMPQEI PKQDIYNIRD YGAKGDGESL
DTVAIQAAID ACNAAGGGTV FIPTGVFLSG TLQLKSNVTF HLSAGGKLLG SPKRAHYTAG
KGVPAGNGNI VFLYAVNAER LSIEGKGTID GNGLAFYNGK GDNTGPGQKG IDGNFDRPHL
LIFYQCTELR LHDAFLQASA YHCIRLLQCK QVYIDGVRIY NRVNKNNDGF HFSSCQYVHI
TNCDVQCQDD ACALFGSNKF VTITNCSFST RWSIFRFGGG ESQNIAVSNC LIYDTYGCPI
KISAGRASIE NFSFSNIIMK NVTGPIGIGF SGTPGNIQGG SNQVAGKPFI RNISFNGIRA
SVVAAPVPHP DIHFELNFKE GERNSCITLN AMDDHYLENI SFTDVHVTYA GGGTLAQAGK
HDVPKIAAEY FGVWDTAPGG PPAYGLYARN VKGLTLQNVR FEFEHNDSRP AIVFDNVQDA
AINGLSLQGS TTAPSLLRIV NSKDLLFTAT RVLSPCKVLL SLEGKSNEAI TIDGGEFIKA
ITKVVYSGGA NEKSLKLRT
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