Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0519 |
Symbol | |
ID | 8251606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 627952 |
End bp | 629796 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644934169 |
Product | hypothetical protein |
Protein accession | YP_003090805 |
Protein GI | 255530433 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.479378 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000880431 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAGTCAT CTTCCATTAA ATTTTTAATT GCTGCTTTTA TACTGCCCTG CAGTTTTGTA AATGCACAGG ATACACTCAG ATATACCGGA AAAACGATTG TTAATGTTGA TTATCACCAT GGTCAGCTTC CTCCGGCAGT TGGAGTCCAT AATATACAGG TGTTCCGGGC CGACCGCTCC AATCCGGACA AGGCCACTGG GTTAAACTGG ACTTACAGTC ACCAGCCCAT GCTGGCTTAC TGGAACAATA AATTTTATCT GCAATACCTG AGTAATCCGG TTGGGGAGCA TATCCCCCCC GGACAAACAC TCCTGACCAC TTCTTTGGAT GGAAAAACCT GGGAAACACC CAGGGTAATT TTTCCACCCT ATAAAATAGC CGATGGTACC AGGAAAGCGG GGATTGATCA GGTGGCAAAA AACCTTACTT CGGTGATGCA CCAGCGGATG AGCTTTTTCT TATCCGGAAA AAAGCGTTTG CTGGCACTGG CTTACTATGG GATTTCTTTT AACCCTAAAG ATAGCCCGAA TGATGGAAAC GGGATAGGCC GTGTAGTGCG GGAAATTTTA CCGGATGGGA AATTCGGTCC GATTTACTTT ATCAACTATA ACCACCTGTA CAGTGAAAAA AACACAAACT ATCCCAATTA TAAACGTAGT AAGGATAAGG GCTTTGTTGC AGCCTGCAAC GAGCTGCTGG GCAATGCTTT GATGGTGCAG CAATGGGCCG AAGAATCTGA TGACAATGAT CCGCTGATTA AATTAAAGGG TGATTATAAG GCTTTTAGTT ATTACCACCT GCCCGACAAC AGGGTTGTTG GGCTTTGGAA AAATGGCTTG ACCAGTATCA GCAAGGATGA AGGCAAAACC TGGGAATATA AACCTTTGAG GGCGCCTAAA GTGGTAAACA GTAATGCCAA GATCTGGGGG CAGCGTACCT CAGACGGAAA GTTTGTTACC GTATATAATC CATCAGAATT CAGGTGGCCG CTTGCCCTTT CTGTGAGTAA TGAAGGGTTG AATTATGATG ATTTACTGCT GGTGCATGGA GACATTACCG CCATGCGTTA TGGCGGTTCA TATAAGTCCT ACGGCCCCCA GTATGTAAGG GGAATTGAGG AAGGTAACGG CGTGCCGCCG GATAAAAAAT TATGGGTTAC CTATAGCGTT AATAAGGAAG ATATCTGGGT ATCTTCCATT CCCGTGCCAG TAAAAGCAAA GGCCGATCAG CAGGCAAATG AAGTGTTCAA TACCATGCCG GATGCTGAAG AACTTGTAAA CTGGAATACC TATAGCCCCC TAAGAGCACC TGTAAAAATA GTTAAAATGC CCGACGGGAA TAAAGGACTT TCTTTGGCTG ATTTTGACCC TTTTGACTAT GCCAAGGCAG AAAGAGTTAT TCCTGCGTCC AAAAAACTGA TTGCTGCCTT TTCAGTTATT CCGCAGCAAA ATGACAATGG GCTGCTGAAT ATAGAATTTC AGGATGCCAG GGGAGCTGCT GGTATCAGGC TTTCTTTTGA TGATAAGAAG GTCTTAAAGC TAAAGGCGGG TTATAGAGAT AAGCACCTGA TGAATTATGT GGCCGGACAG CGTTATGATA TTGAGGTGAA ACTGGATGTG GATACCAGAT TGTATACCGT AACCGTAAAC GGGCAGCAAA TGGGAAACAG CTTTTTGTTT GCACCATTGG AAAGTGTTTC CCGCATTGTT TTTAAAACTG GTGACGTGGT ACGTTTTCCA GATGCGGATA CGCCTACCGA TCAGAATTAT GATCTTCCGG ATGCCGATGG CAAAACTAAA CCTGCTGGTT TTTATATTCC ATCCCTTCAA ACAAAAACTT TTTAA
|
Protein sequence | MKSSSIKFLI AAFILPCSFV NAQDTLRYTG KTIVNVDYHH GQLPPAVGVH NIQVFRADRS NPDKATGLNW TYSHQPMLAY WNNKFYLQYL SNPVGEHIPP GQTLLTTSLD GKTWETPRVI FPPYKIADGT RKAGIDQVAK NLTSVMHQRM SFFLSGKKRL LALAYYGISF NPKDSPNDGN GIGRVVREIL PDGKFGPIYF INYNHLYSEK NTNYPNYKRS KDKGFVAACN ELLGNALMVQ QWAEESDDND PLIKLKGDYK AFSYYHLPDN RVVGLWKNGL TSISKDEGKT WEYKPLRAPK VVNSNAKIWG QRTSDGKFVT VYNPSEFRWP LALSVSNEGL NYDDLLLVHG DITAMRYGGS YKSYGPQYVR GIEEGNGVPP DKKLWVTYSV NKEDIWVSSI PVPVKAKADQ QANEVFNTMP DAEELVNWNT YSPLRAPVKI VKMPDGNKGL SLADFDPFDY AKAERVIPAS KKLIAAFSVI PQQNDNGLLN IEFQDARGAA GIRLSFDDKK VLKLKAGYRD KHLMNYVAGQ RYDIEVKLDV DTRLYTVTVN GQQMGNSFLF APLESVSRIV FKTGDVVRFP DADTPTDQNY DLPDADGKTK PAGFYIPSLQ TKTF
|
| |