| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0499 |
|---|
| Symbol | |
|---|
| ID | 8251586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 596448 |
|---|
| End bp | 597287 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644934149 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_003090785 |
|---|
| Protein GI | 255530413 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.809571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCAG GCGTTTTAAA ATTGTTAACC AAAAGAAGGA GGAAAATGAT AAAGAAACAC
ATCATACCAT GTACGGTAAT TATTGCATTA CTGGTTATGG CAAAAGTGTT TGCTTACAAC
ATGCCCCAAG CAGCGGAGAG TATTTCAAAA GAAGAAAAAA GTACAACAAA AAAAGACACA
GTAACAACAA AGATCAGGAA GCCATTATCT CTTATGGCTC AGTTAAATTT TGCAGAAGAG
TCGCTACCTA TTGGTGATGC CAGGGTAGAG AAAAAAATGA AAAAGACACT CGCTGCACAT
TATTTCAGCA ATTTACAAAC CAATATGCTG CACAGAAAGG CAGCGGAATG GTTTCCGATT
ATCGAACCTA TCCTGGCCGC TTACGGCATT CCGGAAGATT TTAAATATAT GCCTTTGGTA
GAGTCGGGGT TAAATAGTGG GGTTTCGCCT AAAGGTGCTG CAGGTTTCTG GCAATTTATG
CCCGGAACTG CCCGAATGTA TGGCTTAAAA GTGAATTCAA AGGTAGATGA GCGCAACAAC
TTACGTAAAT CTACTATCGC GGCAGCCAAA TACATTAAAG AGCTTTATGG CATTTTTGAC
AGCTGGACAC TGGTTGCTGC TGCTTATAAT GTAGGCGACA GCCACATGAA GCGCCAGATT
AACAGGCAAA ACCAGGATAA TTATTTTAAG ATGAAGCTGA ACAATGAAAC GGGGGGCTAT
GTTTATAAAC TGATATCCAT GAAAGAGATC ATGAAAGATC CGGTTCGTTA TGGCTATAGG
GCCCCAAGGG CCTTGCTGGC TTATAATGCA GAAAAAGCTG AAGAAAAACG TTCAGAATAA
|
|---|
| Protein sequence | MFAGVLKLLT KRRRKMIKKH IIPCTVIIAL LVMAKVFAYN MPQAAESISK EEKSTTKKDT
VTTKIRKPLS LMAQLNFAEE SLPIGDARVE KKMKKTLAAH YFSNLQTNML HRKAAEWFPI
IEPILAAYGI PEDFKYMPLV ESGLNSGVSP KGAAGFWQFM PGTARMYGLK VNSKVDERNN
LRKSTIAAAK YIKELYGIFD SWTLVAAAYN VGDSHMKRQI NRQNQDNYFK MKLNNETGGY
VYKLISMKEI MKDPVRYGYR APRALLAYNA EKAEEKRSE
|
|---|
| |