Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0479 |
Symbol | |
ID | 8251566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 572115 |
End bp | 573926 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644934129 |
Product | beta-lactamase |
Protein accession | YP_003090765 |
Protein GI | 255530393 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000533746 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA ATAATCTGTT CGGCTTAATG ACCATCAGTT TTATGGTCCT GTTCAGGCTT AGCGCTTGCG CACAGGACCA CCGGCAAAAT GAGCAGCAAC TTGCTGCTTT AAACAAGATC AGCAACAATA CCATCCTGTT AAACAACCAC AACAACATTA TTCCGCTATT AGACCTGGAA AAGAAAACCA TTGCATCCGT TAATCTCGGC TTTGGCAGTC AGCAGGTATT TGACAGCCTG CTCAACAAAT ATGCAAAGGT TGCCTCTTAT TCATCGGCAG ACTATCAAAC CCAGACCACT CTAAACAGTC TTGAAGATGA TTTGAAATAT TTTAATACAG TTGTCGTTAC CATTCCTTCC ACAGCAACCG GCGATGCCAG AAATCTGGGG TTCATCAGGA GCCTGACTAA AAACAAGCAG GTAATTGTAT GTTTACTCGG AGAGGGGCGC AGCTTAACTG CTTTTGACGA CTTGAAAGCA CCACTGATCT GGACCGATCA AAACACACCT CTGGCAGCAA TGGTGTTGCC CCAGGTAATC TTTGGTGGAA TTGGTGTCAG CAAAAAACTG GTTGCCAGTT ATTCTCCCAA ATATATCGGG GGATCCGGCT TCACTACGGT AGCCACCCGC CTCAAATATA CGGTACCGGA AGACGCCGGC GTGAATTCAA ACAACCTGAA AGAGATAGAT AAGATTGCTG AGGAGGCAAT AAGAGAACGT GCCACTCCCG GCATGGTAGT ACTGGTAGCT AAAGATGGTA AGGTGATCTT TAATAAAGCT TACGGACACC ATACTTATGA TAAGCTGCAG CCTAACCGCC TGACGGACAT CTTTGATCTT GCTTCCATGA CCAAGATCAC TGCGACTACC ATGGAGTGTA TGAAACTCAG CGACGAAGGA AAATTAAGTA TGGATTCTAC ACTTGGCAGC TATGTGGCAC TTGCACGGCC AACAGATAAA AACAGCCTTA CCGTACGTGA ATTACTGCTC CATCAGGCAG GGCTGATCCC GGATATTCAA ACTTTTGGCA AAGTGAAACC TTCAGATCAC AGCAGAGATT CTTCAGCGTC CTTTCCTACC AAGGTCAATG AAAATTATTA CCTCAGAAAA AATTATTTTA AAGAGGTGAT GCAGCCTGAT ATGCTGAACT CTCCTTTAAG GACCAGAGGA AAATATGTAT ATAGCGACGT TGGCATGTGC CTGCTGCAGC AAATTGTAGA AACAATTACT TCGGAGCCGG AAAACCTGTA TGTTGATGAA CATTTCTATA AACCCCTTGG TATGCAGACA ACCGGTTTTT TACCGCTTAA GCGTTTTAGC CCGGACCAGA TCATCCCAAC AGAAAACGAC AAAGACCGCA ATGCACTGCT TGACGGTTAT GTACATGACC CTACTGCGGC TCTGATGGGT GGTGTAGCTG GACATGCCGG TTTATTTGGC AATGCAAATG ACATCGCCAT TATCTACCAG ATGATGCTGA ATAAAGGCAG TTATGGGGGT AAAGAATACA TAAAACGCCC AACAGTGGAG TTGTTTACCT CCAAACAATC TACCATCAGC CGCCGGGGGC TTGGTTTCGA TCGCTGGGAT CCGGACCTGA CCAAAACATA TCCTTCAGCG CTGGCATCGC CACAAACGTA TGGTCATACC GGTTACACCG GGACCTGCGT ATGGGTAGAT CCTGTACGGG GTCTGGTTTA CATATTCCTT TCTAACCGTG TAAACCCTGT CGTAAGCGAA AAGTTAGGTA CACTCAAAAT CAGGGGAAGG ATTCAGGATG CCGTCAATAA GGCCATTGAT ACGGGAATTT AA
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Protein sequence | MKKNNLFGLM TISFMVLFRL SACAQDHRQN EQQLAALNKI SNNTILLNNH NNIIPLLDLE KKTIASVNLG FGSQQVFDSL LNKYAKVASY SSADYQTQTT LNSLEDDLKY FNTVVVTIPS TATGDARNLG FIRSLTKNKQ VIVCLLGEGR SLTAFDDLKA PLIWTDQNTP LAAMVLPQVI FGGIGVSKKL VASYSPKYIG GSGFTTVATR LKYTVPEDAG VNSNNLKEID KIAEEAIRER ATPGMVVLVA KDGKVIFNKA YGHHTYDKLQ PNRLTDIFDL ASMTKITATT MECMKLSDEG KLSMDSTLGS YVALARPTDK NSLTVRELLL HQAGLIPDIQ TFGKVKPSDH SRDSSASFPT KVNENYYLRK NYFKEVMQPD MLNSPLRTRG KYVYSDVGMC LLQQIVETIT SEPENLYVDE HFYKPLGMQT TGFLPLKRFS PDQIIPTEND KDRNALLDGY VHDPTAALMG GVAGHAGLFG NANDIAIIYQ MMLNKGSYGG KEYIKRPTVE LFTSKQSTIS RRGLGFDRWD PDLTKTYPSA LASPQTYGHT GYTGTCVWVD PVRGLVYIFL SNRVNPVVSE KLGTLKIRGR IQDAVNKAID TGI
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