Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0474 |
Symbol | |
ID | 8251561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 565163 |
End bp | 567784 |
Gene Length | 2622 bp |
Protein Length | 873 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644934124 |
Product | TonB-dependent receptor |
Protein accession | YP_003090760 |
Protein GI | 255530388 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTCC GCATCACTAA ACAAACAATC AAATATCAAA TTATGAAAAA AGTATTACTT TTCATCCTCC CATTTTTGCT TTCGGCAAGC TTTACTTTTG CTCAAAGCCA GATAACGGGT ATTATAAAGG GGGCGAATGG TGCTCCTGTA CCCAATGCCA CTGTGCTCAT CAGAGGCACA AAAATCACTA CACTGGCTAA TGATAAAGGT GAATTCAGCA TCAGTACAAA ACAGGAGCCC CCATTCTATC TTCAAGTCAG CTCCGTTGGC TATAAAGCCC AGGATTTTCA GATCCTGAAA TTTCAGGATA CGCCTTTGGA ATTAACCCTG GTTGAAAATG CAGAGCTGGA CGAAATTGTT GTAACTTCAA GAAGACGGTC GGAGGTTTTA CAGGATGTGC CCATCGCAAT CACAGTTATT GGTGGTCAGG CTGCAGAAAA CGCAGGGGCA TTTAACGTTA ACCGTTTAAA AGAACTGGTA CCTTCAGTAC AGCTCTATGC TTCAAACGCA AGAAACACTA CACTTAACAT CCGGGGATTG GGCTCAACAT TTGGATTAAC CAATGACGGT ATTGATCCGG GAGTAGGTTT TTATGTTGAT GGAGTTTACC AGGCCCGTCC TGCAGCTACT TCTACAGATT TTCTTGACAT AGAACAGATA GAAATCCTGC GTGGCCCACA GGGCACCTTA TTTGGTAAAA ATACAACCGC GGGTGCCTTC AACATCACCA CCACAAAACC GACCCTGGTT CCAACAGCAA AAGTTGAACT GAATGTTGGA AACTACAATT TTATACAAGC AAAAACTTCG GTTTCAGGTG CAGTAGCAAA AAATCTTGCA GCAAAGTTAG CCATATCGGG TACTCAAAGA GATGGTACAA TTTACAATAC CAGAGAAGAA CGCAGATACA GCGGCCAAAA CAATCTTGGT TTTAAAGGCG CTTTGTATTT TACGCCCTCA GATAAATTAC AGGTGTTGTT AAGCAGTGAT GTAAGCATTC AGCACCCGGC AGGCTATCCA CTGGTAATTG CCGGTGTAAC TGCTACAGAA AGAAGCGCTT ACCGTCAGTA TGCCAAAATT GTTTCTGATT TAGGATATCA GCAACCTAAA ATAGACCCTT TTTCAAGAGA GATCAACACC AATACGCCAT GGAAACAGGA TCAGTCAATT GGCGGGATAT CTTTAAATGT GGATTATAAG ATCGGAAACG GAACACTTAC TTCAACTACC GCCTGGAGAT TCTGGAACTG GGATCCTACA AATGACAGGG ATTTCTCTGA GTTGTCGGCC CTAACCAAAT CACAAGGTAA CTCGCGTCAT GACCAGTATT CTCAAGAAGT GAGATATGCT GGTAATCTCA CAGAAAAATT AAGCGGGGTG ATCGGTGTAT TTGCGCTTGC CCAGAATTTG AAGGGTCTGT CCCAGACTGA AGAGGTGGGT AAAGATCAAT GGAGATTTGT ACAAACAGCT GCAACCGGTG CTCAGGCAGG GTACACTACA CCTGGTCTGC TGGATGGCTT TGGCATCAAA ACCAATTCAA CCATTAAATC GTTAAGTGCG GCTATCTTTG CACAGGCCGA TTGGGAATTT ATAGAACACC TGCATGTTTT ACCTGGTTTA AGGTTCACTT ACGATAAAAA AGATGTGGAT TATGACAGGG TAACTTATGG TGGTCTTCAA ACTACTGACC CTGCTCTGCT TGCCCTTAAA GCTGCTGTGT ATGCCAATCA GCAGTTCAAT ACCAGTACAG ATAACAATAA TTTGTCTGGA AACATTACCT TGTCCTACCG TCCTACTACC AAGTTAAACG TTTATGGAAC TTTCTCTACC GCCTATAAAC CAGTTGGGGT AAATGTTGGG GGCTTGCCAA CTACCAGCAC CGGAGAAGCA GATCTATCTC TTGCTGTCGT AAAACCGGAA TATGTTCAGC ACTATGAGTT CGGTTTAAAA ACAAAACCTG TGAAAGGTGC GATTGTAAAT TTAACCGCCT TTAATACAGA TATTAAAGAT TACCAAACCA ATGTACAATC TCCTCAGCTG GGTGTAAACA GGGGGTATCT TGCAAATGCA GAAAAAGTGA ACGTAAAAGG TCTGGAAGTT GATGGAAGTT ACCAGCTGGA AAGGTTTTTA ACTTTAAATG CAGCTGTAGC TTACCTGGAT GGTAAATATA AAAAATTTAC CAATGCACCG CTACCTTTGG AAGAAACCGG CCATACAGAA CTTGTTAATG GCGTAGCTAC CCAGGTGGCC TTTAAAGATG CTTCCGGAGG ACGATTGCCG GGGATCTCTA AATGGAATGC TTCCGGTGGT GCCGAGTTTA GTACTCCTGG CAAAGTAGGT ACAAGAGACG GCAGGTTTTT TATTGCAGGT GATATCAGCT ACCGTTCAGA ATACTCTTCA AACCCAACAC CTTCAAAAGT ATTAAATGTT GATGGTTATA CCCTGGTGAA CGCAAGAATT GGATTCAAAT CGGATAAAAT CTCCATTTTT GGCTGGAGCA GAAATATTGG AAATACCAAG TACTTCGAAC AATTGCAGGC AGCAGCAGGT AACTCCGGTT TGTATGCAGG TGTACTTGGC GACCCAAGAA CTTATGGGGC TACATTGCGT TATGCTTTTT AA
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Protein sequence | MDFRITKQTI KYQIMKKVLL FILPFLLSAS FTFAQSQITG IIKGANGAPV PNATVLIRGT KITTLANDKG EFSISTKQEP PFYLQVSSVG YKAQDFQILK FQDTPLELTL VENAELDEIV VTSRRRSEVL QDVPIAITVI GGQAAENAGA FNVNRLKELV PSVQLYASNA RNTTLNIRGL GSTFGLTNDG IDPGVGFYVD GVYQARPAAT STDFLDIEQI EILRGPQGTL FGKNTTAGAF NITTTKPTLV PTAKVELNVG NYNFIQAKTS VSGAVAKNLA AKLAISGTQR DGTIYNTREE RRYSGQNNLG FKGALYFTPS DKLQVLLSSD VSIQHPAGYP LVIAGVTATE RSAYRQYAKI VSDLGYQQPK IDPFSREINT NTPWKQDQSI GGISLNVDYK IGNGTLTSTT AWRFWNWDPT NDRDFSELSA LTKSQGNSRH DQYSQEVRYA GNLTEKLSGV IGVFALAQNL KGLSQTEEVG KDQWRFVQTA ATGAQAGYTT PGLLDGFGIK TNSTIKSLSA AIFAQADWEF IEHLHVLPGL RFTYDKKDVD YDRVTYGGLQ TTDPALLALK AAVYANQQFN TSTDNNNLSG NITLSYRPTT KLNVYGTFST AYKPVGVNVG GLPTTSTGEA DLSLAVVKPE YVQHYEFGLK TKPVKGAIVN LTAFNTDIKD YQTNVQSPQL GVNRGYLANA EKVNVKGLEV DGSYQLERFL TLNAAVAYLD GKYKKFTNAP LPLEETGHTE LVNGVATQVA FKDASGGRLP GISKWNASGG AEFSTPGKVG TRDGRFFIAG DISYRSEYSS NPTPSKVLNV DGYTLVNARI GFKSDKISIF GWSRNIGNTK YFEQLQAAAG NSGLYAGVLG DPRTYGATLR YAF
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