| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0428 |
|---|
| Symbol | aroB |
|---|
| ID | 8251513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 500353 |
|---|
| End bp | 501537 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644934076 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_003090714 |
|---|
| Protein GI | 255530342 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.989319 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTATT TAGAACAGTC GTTTAGTGTA AAATTTGACT ATAAAATCTA CTTTACCTCT
TCCCTATTTG AGTTGGGAAA CCCCTTGCTG GCAGATTTTT TTAAGGGCAG GCCATCGGCA
GCCCTGCGCA AAATATTTTT TGTTATAGAC GGGGGCGTTA CCGAAAAGCA TCCCAATCTG
CAAGAAGCCA TTAAAACTTA CTTTAACCAA TGCCAGGAGG TCCAACTGGT CCCTGAAATC
AGGATTGTTC CTGGTGGCGA GGCTTCAAAA AATGATACTG CATTATTTGA GCAGCTTGTA
GAGGCGGTAA ATGTATATGG GATAGACCGG CACTCTTATA TTGCCGCCAT TGGCGGAGGC
GCAGTGCTGG ATCTGGTGGG CTATGCTGCG GCGGTTTCGC ACCGTGGGAT TAAACATATC
CGCATTCCTA CTACGGTACT TTCGCAAAAC GATTCAGGTA TCGGGGTTAA AAACGGCATC
AATTATAAAG GTAAAAAGAA CTTCCTTGGT ACTTTCGCCC CTCCTGTTGC CGTGTTTAAC
GATGACCGCT TTCTGGAAAC ACTTAACGAC CGTGATTACC GGTCCGGAAT TTCGGAAGCG
ATAAAAGTAG CGCTGATCAA GGACCCTGAA TTCTTTTACT GGATTGAGGC CCATACCGCA
GCCCTGGCTG CGCGTGACCC GGAAAGCATG AACTACCTGA TCAGGCGCTG TGCAAAACTT
CATCTGGACC ATATTGCCGG TGATGATCCT TTTGAAACCG GATCGGCCAG GCCCTTGGAT
TTTGGACATT GGAGTGCACA TAAACTGGAA CAACTGAGTA ATTTTACAGT GCTGCATGGC
GAGGCTGTTG CCATGGGGAT TGCCCTTGAC AGTGTATATT CCTTTTTAAC GGGTTTGCTC
TCTGAAGAAA AAGCGCTGCG CATCCTCCAG GTACTGAGCG CACTGAATTT CAGTATCTCA
GACCCTATCA TCCAGATCAA AGACAGCGGT TCAGCCATAT TGAAAGGGCT GGCAGAATTC
CAGGAGCACC TGGGTGGCCT GCTCACCATT ACCCTCCTTA CCGATATCGG ATCCGGAAAG
GAAGTACATG AAATGGATCA TCAGCAACTG ATCAATGCCA GCGCTTATAT TGCTGGTTTC
ACAAAAGAAA ATACCGCATT AAATAGCATC CGCCATGAAA GTTAA
|
|---|
| Protein sequence | MNYLEQSFSV KFDYKIYFTS SLFELGNPLL ADFFKGRPSA ALRKIFFVID GGVTEKHPNL
QEAIKTYFNQ CQEVQLVPEI RIVPGGEASK NDTALFEQLV EAVNVYGIDR HSYIAAIGGG
AVLDLVGYAA AVSHRGIKHI RIPTTVLSQN DSGIGVKNGI NYKGKKNFLG TFAPPVAVFN
DDRFLETLND RDYRSGISEA IKVALIKDPE FFYWIEAHTA ALAARDPESM NYLIRRCAKL
HLDHIAGDDP FETGSARPLD FGHWSAHKLE QLSNFTVLHG EAVAMGIALD SVYSFLTGLL
SEEKALRILQ VLSALNFSIS DPIIQIKDSG SAILKGLAEF QEHLGGLLTI TLLTDIGSGK
EVHEMDHQQL INASAYIAGF TKENTALNSI RHES
|
|---|
| |