Gene Phep_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0008 
Symbol 
ID8251092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp8282 
End bp10144 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content42% 
IMG OID644933657 
ProductABC transporter related 
Protein accessionYP_003090296 
Protein GI255529924 
COG category[R] General function prediction only 
COG ID[COG0488] ATPase components of ABC transporters with duplicated ATPase domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.925372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCACAC TTATTGCAGC CGAAAACTTA GGCCATGCTT ATCACGACGA ATGGCTATTC 
AAAAATTTAA CCCTGGGTAT CCAGACCGGG CAACGCGTAG CGTTGGTAGG AATTAATGGT
GCCGGAAAAA GCACCTTACT GAAACTCCTT GCGGAAAGGT TCTCTCCTCT TGAAGGAAAA
ATTGTAAAGA ACAAATCTGT AAAAATTGGC TTTCTGGATC AGGAGCCCAG TTTTCCGGAG
AATTATTCTA TCAGCGATTT CATCTTTTCC CTCGAAAACA AACAGCAGCA GCTGATCAAA
GAATATGAGG AACTGATAGA AGATCCGAAC CCTGATGAAA AGACTTTAAA CCGTTTATAT
GAGGAGCTGA GCGAGCACAA TGCTTGGGAA TACGAGCATG AGATCAAAAC CATTCTGAGC
AGAATGGGCA TTAACCACCT GCAGCAAAAG ATCGCTACCT TATCAGGCGG ACAAAAGAAA
CGCCTGGCAT TGGCCAAACT TTTGATTGAA GACCCTGAGA TCTATGTACT GGACGAACCC
ACCAACCACC TGGACATTGA TACCATAGAA TGGCTGGAGA AATTACTAAC TTCAGGCAAC
AAGACCATTC TGCTGGTTAC CCATGACAGG TATTTTTTAG ACAATGTATG CAATACTATT
GTAGAGCTTG ACCGGGGGAA GATCTACAAC TATAACGGAA ATTATGCCTA TTTCCTGGAA
AAGAAATCGG AAAGGGAGGC TGCGGATGAA AGCACATTTC AAAAAAACAA AAACCTGCTG
AAGAAAGAGC TGGAATGGAT GAGAAGGATG CCGGCAGCAC GTACCACCAA ATCGCAATCC
AGGATAGATG CTTTCTATGA CTTAGAGGAA AAAACGAAAC AAAGAACTGA TAATCAAAAG
GTTACATTAA ATGTAAAAAT GTCCAGACAA GGTAATAAAA TACTTGAACT GGATCATATC
GGGCAGTCCT TTGATGGCAA AAACATCATT AACGACTTCA GTTATACTTT TAAACGCGCG
GATAGAATTG GACTGGCTGG TAAAAACGGG ACCGGAAAAT CAACTTTACT GAACATCATT
ACCGGATACT TGCAGCCTGA AAAAGGAAAG GTTAGTACCG GCGATACAAC CGTGTATGGT
TATTACAAAC AGGGCGGACT CGCATTTAAT GAAAAAGAGC GTGTAATTGA TATTGTGAAA
TCAGATGCAG AATATATTAA AATGGCCGAT GGGCAAACCA TCTCTGCTTC GCAACTGTTA
ACCCTCTTTC TCTTCCCTCC TAAAAAACAA CATGGGATGG TAGAGAAGCT GAGCGGTGGT
GAAAAGAAAA GGTTGCACCT GATGAAGGTG TTGATGCAAA ACCCGAATTT CCTGATCCTG
GATGAGCCGA CCAATGATCT GGATATTGAT ACCTTAAATG TACTGGAAGA ATTTTTGGAA
AACTTTCCGG GCGTATTGAT CCTGGTTTCT CACGACCGGT ACTTACTGGA CAAAATGAGC
GAACAATTGT TCATCATGGA AGGCAATGGA GCGGTAGCCA TTTACAATGG AAATTATTCG
GAATACAGAA TAAGTTTAGA TATACCTAAA GAAAAACCAG AACAAAAACA GAAACAAACT
ACAGCCAGCC CCGCTCCTGC AGCTGCAGTA AAAAAATTAA GTTATAAAGA ACAACGGGAA
CTGGAAGAAC TGGAGAACAG AATAGCAGCA GTGGAAACTG AGCTCGGTAC ACTGAATGCT
TCCCTGTTGA AAACAGATAC ATCAAACTAT CTAAAGCTGC AGGAACTGAC TAAAACTATA
GAGACGTTAA ACGCGGAGCT GGAAGAAAAA ACAGAACGGT GGTTAATACT TTCTGAAGCA
TAA
 
Protein sequence
MSTLIAAENL GHAYHDEWLF KNLTLGIQTG QRVALVGING AGKSTLLKLL AERFSPLEGK 
IVKNKSVKIG FLDQEPSFPE NYSISDFIFS LENKQQQLIK EYEELIEDPN PDEKTLNRLY
EELSEHNAWE YEHEIKTILS RMGINHLQQK IATLSGGQKK RLALAKLLIE DPEIYVLDEP
TNHLDIDTIE WLEKLLTSGN KTILLVTHDR YFLDNVCNTI VELDRGKIYN YNGNYAYFLE
KKSEREAADE STFQKNKNLL KKELEWMRRM PAARTTKSQS RIDAFYDLEE KTKQRTDNQK
VTLNVKMSRQ GNKILELDHI GQSFDGKNII NDFSYTFKRA DRIGLAGKNG TGKSTLLNII
TGYLQPEKGK VSTGDTTVYG YYKQGGLAFN EKERVIDIVK SDAEYIKMAD GQTISASQLL
TLFLFPPKKQ HGMVEKLSGG EKKRLHLMKV LMQNPNFLIL DEPTNDLDID TLNVLEEFLE
NFPGVLILVS HDRYLLDKMS EQLFIMEGNG AVAIYNGNYS EYRISLDIPK EKPEQKQKQT
TASPAPAAAV KKLSYKEQRE LEELENRIAA VETELGTLNA SLLKTDTSNY LKLQELTKTI
ETLNAELEEK TERWLILSEA