| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5551 |
|---|
| Symbol | |
|---|
| ID | 3713117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 6218442 |
|---|
| End bp | 6220547 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA |
|---|
| Protein accession | YP_351279 |
|---|
| Protein GI | 77461772 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.281343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGCA TAGACGCCCT CGCCGATCGC TTATCGACCT ACCTCGGCAA CGACCAGGTC
AACCTGGTCC GCCGAGCGTA TTTCTACGCC GAACAAGCCC ACGACGGCCA ACGCCGCCGC
AGCGGCGAGG CGTACGTCAC GCATCCTCTT GCCGTGGCGA ATATTCTTGC CGACATGCAC
ATGGACCATC AGAGCCTGAT GGCTGCGATG CTGCATGACG TGATCGAAGA CACCGGTATC
GCCAAGGAAG CGCTGCAAGC GCAGTTCGGT GAAACCGTGG CCGAACTGGT CGACGGGGTC
AGCAAACTGA CCCAGATGAA CTTCGAGACC AAGGCCGAAG CCCAGGCTGA AAACTTCCAG
AAGATGGCGA TGGCGATGGC ACGCGACATT CGCGTGATCC TGGTCAAGCT CGCCGACCGC
CTGCACAACA TGCGCACGCT GGAAGTGCTG TCCGGCGAGA AACGCCGGCG CATCGCCAAG
GAAACCCTCG AGATCTACGC CCCTATCGCC AACCGGCTGG GCATGCACGC GATCCGCATC
GAATTCGAAG ACCTCGGCTT CAAGGCGATG CACCCGATGC GTTCCGCGCG GATCTACCAG
GCCGTCAAGC GCGCCCGGGG CAACCGCAAG GAAATCGTCA ACAAGATCGA AGAATCCCTC
GGCCACTGCC TCGCCATCGA CGGCATCCAG GGTGAAGTCA GCGGTCGCCA GAAACACCTC
TACGGCATCT ACAAGAAAAT GCGCGGCAAG CGTCGGGCCT TCAACGAGAT CATGGACGTC
TATGCGTTCC GGATCATCGT CGACAAGGTC GATACCTGCT ACCGCGTGCT GGGTGCTGTA
CATAATTTGT ACAAACCGTT GCCGGGACGC TTCAAGGATT ACATCGCGAT CCCCAAGGCC
AACGGCTATC AGTCGCTGCA TACCACGCTG TTCGGCATGC ACGGTGTACC GATCGAGATC
CAGATCCGCA CCCGCGAAAT GGAAGAGATG GCCAACAACG GCATCGCCGC CCATTGGCTG
TACAAGTCCA GCGGCGACGA GCAGCCGAAA GGCACTCACG CCCGCGCCCG TCAGTGGGTC
AAGGGCGTGC TGGAAATGCA GCAACGCGCC GGCAACTCGC TGGAATTCAT CGAGAGCGTG
AAGATCGACC TGTTCCCGGA CGAGGTCTAC GTGTTCACGC CCAAAGGCCG GATCATGGAG
CTGCCCAAAG GCTCCACGGC GGTCGACTTT GCCTACGCGG TGCACACCGA CGTCGGCAAC
AGCTGCATCG CCTGTCGGAT CAACCGTCGT CTCGCGCCGC TGTCCGAACC GCTGCAAAGC
GGCTCCACGG TCGAGATCGT CAGCGCTCCT GGCGCACGGC CGAACCCGGC GTGGCTCAAC
TTCGTGGTCA CCGGCAAGGC GCGGACCCAC ATCCGCCATG CGCTGAAACT GCAACGCCGC
TCCGAATCCA TCAGCCTCGG CGAACGCCTG CTGAACAAGG TGCTCAACGG CTTCGACAGC
GCGCTGGAAC AGATTCCGGC CGAACGCGTG AAGGCGATGC TCACCGAGTA CCGCCTCGAA
CTGATCGAAG ACCTGCTCGA AGACATCGGA CTGGGCAACC GTATGGCCTA TGTCGTGGCG
CGCCGCCTGC TCGGCGAAGG CGAACAACTG CCAAGCCCGG AAGGTCCGCT GGCGATTCGC
GGCACCGAAG GCCTGGTTCT CAGCTATGCC AAATGCTGTA CGCCGATCCC GGGCGACCCG
ATTGTCGGTC ACCTGTCGGC GGGCAAAGGC ATGGTCGTGC ACCTGGACAA CTGCCGCAAC
ATCAGCGAAA TCCGCCACAA CCCGGAAAAA TGCATCCAGC TCTCGTGGGC CAAGGATGTC
ACCGGCGAAT TCAACGTCGA ACTGCGCGTC GAGCTGGAAC ACCAGCGCGG CCTGATCGCC
CTGCTGGCCA GCAGCGTCAA CGCAGCCGAC GGCAATATCG AGAAAATCAG CATGGACGAA
CGCGATGGTC GCATCAGCGT TGTCCAGTTG GTGGTCAGCG TCCACGACCG TGTGCACCTG
GCCCGCGTGA TCAAGAAACT GCGCGCCCTG ACCGGGGTGA TCCGCATCAC CCGCATGCGT
GCATAA
|
|---|
| Protein sequence | MPSIDALADR LSTYLGNDQV NLVRRAYFYA EQAHDGQRRR SGEAYVTHPL AVANILADMH
MDHQSLMAAM LHDVIEDTGI AKEALQAQFG ETVAELVDGV SKLTQMNFET KAEAQAENFQ
KMAMAMARDI RVILVKLADR LHNMRTLEVL SGEKRRRIAK ETLEIYAPIA NRLGMHAIRI
EFEDLGFKAM HPMRSARIYQ AVKRARGNRK EIVNKIEESL GHCLAIDGIQ GEVSGRQKHL
YGIYKKMRGK RRAFNEIMDV YAFRIIVDKV DTCYRVLGAV HNLYKPLPGR FKDYIAIPKA
NGYQSLHTTL FGMHGVPIEI QIRTREMEEM ANNGIAAHWL YKSSGDEQPK GTHARARQWV
KGVLEMQQRA GNSLEFIESV KIDLFPDEVY VFTPKGRIME LPKGSTAVDF AYAVHTDVGN
SCIACRINRR LAPLSEPLQS GSTVEIVSAP GARPNPAWLN FVVTGKARTH IRHALKLQRR
SESISLGERL LNKVLNGFDS ALEQIPAERV KAMLTEYRLE LIEDLLEDIG LGNRMAYVVA
RRLLGEGEQL PSPEGPLAIR GTEGLVLSYA KCCTPIPGDP IVGHLSAGKG MVVHLDNCRN
ISEIRHNPEK CIQLSWAKDV TGEFNVELRV ELEHQRGLIA LLASSVNAAD GNIEKISMDE
RDGRISVVQL VVSVHDRVHL ARVIKKLRAL TGVIRITRMR A
|
|---|
| |