| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5125 |
|---|
| Symbol | |
|---|
| ID | 3717043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5758005 |
|---|
| End bp | 5759129 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| Protein accession | YP_350853 |
|---|
| Protein GI | 77461346 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0754257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.720307 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG TCGAATCAAA CGCAGGGGCC AGCGATGTGC TGGTCAGCTT TCGTGGAGTG
CAGAAGAGCT ACGACGGCGA GAACCTGATC GTCAAAGACC TCAACCTGGA CATTCGCAAG
GGCGAATTCC TCACCTTGCT CGGACCGTCC GGCTCCGGAA AGACCACCAG CCTGATGATG
CTCGCCGGTT TCGAGACGCC GACCGCCGGC GAAATTCTCC TTGCCGGGCG GGCGATCAAC
AACGTGCCGC CGCACAAGCG CGACATCGGC ATGGTGTTCC AGAACTACGC GCTGTTTCCG
CACATGACCG TCGCCGAAAA CCTGGCGTTT CCGCTGACCG TACGCGGCCT GAACAAGAGC
GACGTCAGCG ACAAGGTTAA GAAAGTCCTG AGCATGGTTC AGCTCGACGC GTTCGCATCG
CGTTATCCGG CGCAGTTGTC CGGCGGCCAG CAACAACGTG TAGCACTGGC CCGTGCGCTG
GTGTTCGAGC CGCAGCTGGT GCTGATGGAC GAACCCCTCG GCGCCCTCGA CAAACAACTG
CGCGAACACA TGCAGATGGA AATCAAACAC CTGCACCAGC GCCTTGGCGT AACCGTGGTC
TATGTGACCC ACGACCAGGG CGAAGCCCTG ACCATGTCCG ACCGCGTCGC CGTGTTCCAC
CAGGGCGAGA TCCAGCAGAT CGCCCCGCCG CGCACCCTCT ACGAAGAACC GAAAAACACC
TTCGTCGCCA ACTTCATCGG CGAGAACAAC CGCCTCAACG GTCGCCTGCT CAGCCAGAAC
GGCGAGCGCT GCGTGGTCGA GCTGGGGCGC GGGGAAAAGG TCGAGGCGCT GGCGGTCAAC
ATCGGCCAGA CCGGCGAACC GGTCACCCTG TCTATCCGCC CCGAGCGCGT CAGCCTCAAC
GGTTCGAGCG ACCAATGCGT CAACCGCTTC TCCGGGCGGG TGGCCGAATT CATCTATCTG
GGCGACCACG TCCGGGTGCG CCTGGAAGTC TGCGGCAAGA CCGACTTCTT CGTGAAACAA
CCGATTGCCG AGCTCGATCC TGCGCTCGCA GTCGGTGACG TGGTTCCGCT TGGCTGGCAG
GTCGAGCACG TTCGCGCGCT CGATCCTCTT CTAGAGGCGC ACTGA
|
|---|
| Protein sequence | MSQVESNAGA SDVLVSFRGV QKSYDGENLI VKDLNLDIRK GEFLTLLGPS GSGKTTSLMM
LAGFETPTAG EILLAGRAIN NVPPHKRDIG MVFQNYALFP HMTVAENLAF PLTVRGLNKS
DVSDKVKKVL SMVQLDAFAS RYPAQLSGGQ QQRVALARAL VFEPQLVLMD EPLGALDKQL
REHMQMEIKH LHQRLGVTVV YVTHDQGEAL TMSDRVAVFH QGEIQQIAPP RTLYEEPKNT
FVANFIGENN RLNGRLLSQN GERCVVELGR GEKVEALAVN IGQTGEPVTL SIRPERVSLN
GSSDQCVNRF SGRVAEFIYL GDHVRVRLEV CGKTDFFVKQ PIAELDPALA VGDVVPLGWQ
VEHVRALDPL LEAH
|
|---|
| |